Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S13A01NGRL0001_A09
(219 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0758 - 7193287-7193871,7193965-7194421,7194437-7194655,719... 30 0.22
08_01_0757 - 7164380-7164490,7164585-7165041,7165057-7165275,716... 30 0.22
06_03_0795 - 24683023-24683155,24685853-24686057,24686275-246864... 30 0.29
09_03_0184 - 13205741-13206181 28 0.89
12_02_0216 + 15804110-15804284,15804341-15804351 28 1.2
09_02_0511 - 10079180-10079355,10079656-10079722,10080144-100801... 27 2.7
03_02_0260 - 6924532-6924757,6925443-6925546,6925729-6926007,692... 27 2.7
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 27 2.7
09_01_0136 - 2030523-2031062,2032349-2032534,2032642-2032796,203... 26 3.6
07_03_0202 + 15131001-15131047,15131488-15131754,15131913-151319... 26 3.6
07_01_0601 + 4464745-4465010,4465274-4466582 26 3.6
03_02_0259 - 6920472-6920579,6920744-6921022,6921115-6921390,692... 26 3.6
02_01_0138 + 999809-999821,1000456-1001341,1001424-1003221,10037... 26 3.6
10_01_0036 + 427678-428029,431043-431968 25 6.3
12_02_0313 + 17404002-17406410 25 8.3
04_01_0536 - 6965343-6965537,6966407-6966595 25 8.3
03_02_0721 - 10677286-10678018,10679293-10679373,10682516-106826... 25 8.3
02_01_0604 + 4497210-4497569,4497637-4497822,4498218-4498573,449... 25 8.3
>08_01_0758 -
7193287-7193871,7193965-7194421,7194437-7194655,
7194881-7195419
Length = 599
Score = 30.3 bits (65), Expect = 0.22
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 12 HYSTMKASCFSSSPYWPWLPQTEFTWWTIVVFHRTAIV 125
HY+ M SC PW P TE W+ + V + ++V
Sbjct: 173 HYTLMPTSCCKVHILPPWPPPTEAKWFQLFVGKQFSLV 210
>08_01_0757 -
7164380-7164490,7164585-7165041,7165057-7165275,
7165501-7165757
Length = 347
Score = 30.3 bits (65), Expect = 0.22
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 12 HYSTMKASCFSSSPYWPWLPQTEFTWWTIVVFHRTAIV 125
HY+ M SC PW P TE W+ + V + ++V
Sbjct: 79 HYTLMPTSCCKVHILPPWPPPTEAKWFQLFVGKQFSLV 116
>06_03_0795 -
24683023-24683155,24685853-24686057,24686275-24686443,
24686590-24686775,24686916-24687124,24687197-24687362
Length = 355
Score = 29.9 bits (64), Expect = 0.29
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 125 HYCRPMEHHYCPPRELCLRQPW 60
HYCR +E+ YC + L R+ W
Sbjct: 181 HYCRSIENWYCLSKTLAEREAW 202
>09_03_0184 - 13205741-13206181
Length = 146
Score = 28.3 bits (60), Expect = 0.89
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 92 PPRELCLRQPWPIRRRRKT 36
PP++ LR WPI++R KT
Sbjct: 125 PPKQQKLRSEWPIKKRPKT 143
>12_02_0216 + 15804110-15804284,15804341-15804351
Length = 61
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 98 SGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTG 211
SG P+ +H V FF+ SN SGNY + G
Sbjct: 12 SGSPAPPYKNHTVAGADGWFFNATSNTTSGNYSDWAAG 49
>09_02_0511 -
10079180-10079355,10079656-10079722,10080144-10080181,
10080255-10080336
Length = 120
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 86 VVDNSGVPSDGNSDHVVIANPDPFFSQPSNG 178
+++N+G S GN ++ N PFF SNG
Sbjct: 57 ILNNAGATSKGNYALILPVNEFPFFLVYSNG 87
>03_02_0260 -
6924532-6924757,6925443-6925546,6925729-6926007,
6926093-6926368,6926460-6926678,6926758-6926926,
6927208-6927382,6927489-6927600,6929566-6929820
Length = 604
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 86 VVDNSGVPSDGNSDHVVIANPDPFFSQP 169
V++N +P N HVV+ANP P P
Sbjct: 248 VLENCQLPH-ANHGHVVLANPSPILFYP 274
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 26.6 bits (56), Expect = 2.7
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +2
Query: 98 SGVPSD-GNSDHVVIANPDPFF-SQPSNGPSGNYEPIST 208
SG PS GN+ + ++P PF S PS+G SGNY + T
Sbjct: 464 SGSPSHRGNAG--MKSSPSPFAPSGPSSGGSGNYGRLPT 500
>09_01_0136 -
2030523-2031062,2032349-2032534,2032642-2032796,
2032917-2033079
Length = 347
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -2
Query: 122 YCRPMEHHYCPPRELCLRQPWPIRRRR 42
YC+ E+ YC + + + W + RRR
Sbjct: 163 YCKRTENWYCYAKTVAEQGAWEVARRR 189
>07_03_0202 +
15131001-15131047,15131488-15131754,15131913-15131940,
15132120-15132179,15132570-15132696,15132907-15133724
Length = 448
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 74 NRVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPA 217
NR+HV+D + V I+ PDP +P + P P+S G A
Sbjct: 19 NRLHVLDPPCPSPVAAGEKVSISAPDPISHKPVSRPK---VPVSDGNA 63
>07_01_0601 + 4464745-4465010,4465274-4466582
Length = 524
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 122 SDHVVIANPDPFFSQPSNGPSGNYEPISTGPA 217
SDH V+ P PF P++ + + PI T PA
Sbjct: 50 SDHFVLT-PPPFQITPTSIQNSTWLPIPTSPA 80
>03_02_0259 -
6920472-6920579,6920744-6921022,6921115-6921390,
6921473-6921691,6921795-6921963,6922248-6922422,
6922490-6922601,6923343-6923573
Length = 522
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 86 VVDNSGVPSDGNSDHVVIANPDPFFSQP 169
V++N +P N HV++ANP P P
Sbjct: 240 VLENCQLPHP-NHGHVILANPSPILCYP 266
>02_01_0138 +
999809-999821,1000456-1001341,1001424-1003221,
1003716-1003805,1004034-1004111,1004513-1004518,
1004849-1004958,1005174-1005369
Length = 1058
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -3
Query: 121 IAVRWNTTIVHHVNSV 74
IA RW T ++HHVNS+
Sbjct: 507 IAGRWLTQMLHHVNSL 522
>10_01_0036 + 427678-428029,431043-431968
Length = 425
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 119 CRPMEHHYCPPRELCLRQPWPIRRRRKTR 33
CR Y P R++CL P R RR R
Sbjct: 249 CRTAALFYAPHRQVCLYLPSNARGRRMRR 277
>12_02_0313 + 17404002-17406410
Length = 802
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 74 LRQPWPIRRRRKTRSFHCR 18
L+ P +RR RK R+F CR
Sbjct: 529 LKFPTQLRRARKARTFACR 547
>04_01_0536 - 6965343-6965537,6966407-6966595
Length = 127
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 173 NGPSGNYEPISTG 211
NGP+GNYE I G
Sbjct: 102 NGPTGNYEGIGAG 114
>03_02_0721 -
10677286-10678018,10679293-10679373,10682516-10682645,
10682969-10683101
Length = 358
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 110 SDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGP 214
SD V+ +P+ SQP+NG SG GP
Sbjct: 213 SDEARSGSVVVDPEEPSSQPNNGSSGGGGGTPDGP 247
>02_01_0604 +
4497210-4497569,4497637-4497822,4498218-4498573,
4499042-4499122,4499451-4499610,4499855-4499920
Length = 402
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = -2
Query: 122 YCRPMEHHYCPPRELCLRQPWPIRRRR 42
YC+ ++ YC + + R+ W + R R
Sbjct: 177 YCKNTKNWYCYAKTIAERKAWEVARGR 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,463,904
Number of Sequences: 37544
Number of extensions: 120526
Number of successful extensions: 354
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 14,793,348
effective HSP length: 52
effective length of database: 12,841,060
effective search space used: 256821200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -