Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_A08
         (423 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   1.2  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    27   1.2  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   3.7  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   4.8  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   6.4  
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    25   6.4  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    24   8.5  

>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
 Frame = +3

Query: 201  HKMVSLNENLDIDRAHANYRAITNLKRQFPQLRV---FLTVGGDDDTEDPQKYNL 356
            H +V    ++ +  AH  +    N  RQFP L V   F   G D        YNL
Sbjct: 942  HLIVQYWSSIALSTAHVQHGDTLNYSRQFPNLFVQGAFNRFGYDGSMPSKMSYNL 996


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 363 PIKDCTSVDLQCRHHLPLSR 304
           P K+C +  L+C +H+P SR
Sbjct: 46  PCKNCKAGKLECTYHMPSSR 65


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 120  MLPTDLEPALSFCTHLLYKSAGIQADTHKMVSLNENLD 233
            M+ +D EP +S C  LL  +     D   MVS  E  +
Sbjct: 1281 MVESDYEPDVSLCPELLSLAIDFPGDPFVMVSKMEKYE 1318


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
            Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 149  KSRLQVRRQHTCLRFSDIALAVIVAEDF 66
            K RLQ R  +   +FS + LAV+ A+ F
Sbjct: 1055 KKRLQKRLGYNDTQFSKVKLAVLQAQSF 1082


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 24/84 (28%), Positives = 37/84 (44%)
 Frame = +1

Query: 55  VAKAKSSATMTARAISENLKHVCCLRTWSLLFRSAPICCTNLPASKLTHIKWFHSMRIWT 234
           +  AKSS +  +  I  +   V  L+T S L  S+PI  ++L A+  +     HS+    
Sbjct: 530 LTNAKSSLSTPSTTIPTSNSSVS-LQTSSSLIISSPIISSSLTATSTSTPALTHSITPSN 588

Query: 235 LIGRTLIIERSQT*KDSFLNCACS 306
               + +I  S T   S L   CS
Sbjct: 589 TSYTSSLIPSSSTDYSSSLITVCS 612


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 61  KAKSSATMTARAISENLKHVCCLRTWS 141
           K K+S     R   EN+ H+CC  T S
Sbjct: 45  KDKNSTLKIDRLFEENVPHLCCQVTAS 71


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 30  GTNHPASPSSQSKVLCYYDSKSYIRESQARMLPTDLEPALS 152
           G    A+P+S+ +VL Y  S+++   S    LP+   P+++
Sbjct: 551 GLPQRATPASRERVLPYTRSQAFHSTSLPPSLPSGHSPSIA 591


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,644,682
Number of Sequences: 5004
Number of extensions: 30444
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)