Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S13A01NGRL0001_A08
(423 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0517 + 9054816-9055655 29 1.5
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 27 4.7
12_02_0918 - 24299620-24299748,24299890-24300037,24303105-243032... 27 6.2
05_03_0653 + 16617121-16617359,16618892-16618955,16619455-166194... 27 6.2
11_06_0120 - 20324794-20325204,20325416-20325545,20326172-203262... 27 8.2
10_02_0002 - 4018145-4018545,4018563-4018605 27 8.2
05_05_0039 - 21782093-21782320,21782383-21782754,21783031-217834... 27 8.2
02_05_1071 - 33876061-33877308,33877593-33877898 27 8.2
02_05_1001 + 33423562-33424098 27 8.2
01_06_0630 - 30723903-30724496 27 8.2
>03_02_0517 + 9054816-9055655
Length = 279
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 103 ENLKHVCCLRTWSLLFRSAPICCTNLPASKLTHIKWFHSMRIWTL 237
+++ H C+ W L S P+C LPA+ + + IW L
Sbjct: 154 KHVYHQDCILPWLSLRNSCPVCRRELPAAAAPESEADAGLTIWRL 198
>04_04_1630 - 34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 27.5 bits (58), Expect = 4.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 228 LDIDRAHANYRAITNLKRQFPQLRVFL 308
+ +D ANYRA+ L + FP ++ F+
Sbjct: 2373 ITLDTPGANYRAVWALSKYFPNVKTFV 2399
>12_02_0918 -
24299620-24299748,24299890-24300037,24303105-24303280,
24305870-24305917,24306005-24306116,24306209-24306468
Length = 290
Score = 27.1 bits (57), Expect = 6.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 240 RAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQK 347
RAH + + R+ RV VGG DD ED ++
Sbjct: 109 RAHPSLHVLVGWARRMIGFRVSTPVGGCDDEEDGRR 144
>05_03_0653 + 16617121-16617359,16618892-16618955,16619455-16619485,
16619577-16619848,16620528-16620633,16620715-16620872,
16621527-16621714,16621786-16621855,16622814-16622984,
16624363-16624838,16625625-16625871,16626158-16626490,
16627329-16627412,16627751-16627843,16627966-16628025,
16628582-16628680,16628830-16628970,16629207-16629287,
16629895-16629966,16631160-16631231,16632083-16632176,
16632257-16632339,16632455-16632532,16632914-16632970,
16633055-16633132,16633236-16633357,16633463-16633623,
16634419-16634495,16634570-16634683,16634857-16634958,
16635368-16635436,16635437-16635577,16635936-16636109,
16636934-16637063,16637137-16637276,16637369-16637446,
16637813-16637911,16638408-16638803
Length = 1749
Score = 27.1 bits (57), Expect = 6.2
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +3
Query: 9 GLLAVARGTNHPASPSSQSKVLCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSA 182
GL A RGT HPA SK+L ++ + + LPT L+ A LLY+ +
Sbjct: 956 GLAASNRGTMHPAI----SKMLYFHVPSRHPSSTPELELPTLLQSAAVMGIGLLYEGS 1009
>11_06_0120 -
20324794-20325204,20325416-20325545,20326172-20326255,
20326584-20326823,20327418-20327498,20327761-20328113
Length = 432
Score = 26.6 bits (56), Expect = 8.2
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -1
Query: 210 PFYVCQLGCRQICTADGCRTKEQAPSP*AAYVLEI-L*YSSCCH 82
P ++C + CR IC CRTK+ AAY + L Y S H
Sbjct: 265 PDWICPV-CRGICNCSICRTKKGWFPTGAAYRKVVSLGYKSVAH 307
>10_02_0002 - 4018145-4018545,4018563-4018605
Length = 147
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 237 DRAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQK 347
DRA A+YR + + + G DDD DP++
Sbjct: 111 DRAVADYRNVARVWTRVVSFGTTRGFGSDDDPSDPER 147
>05_05_0039 -
21782093-21782320,21782383-21782754,21783031-21783496,
21784896-21784993,21785179-21785362,21785462-21785574,
21785942-21786127,21786191-21786364
Length = 606
Score = 26.6 bits (56), Expect = 8.2
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 130 RTWSLLFRSAPICCTNLPASKLTHIKWFHSMRIWTLIG 243
RTW+ +F + CC S I FH+ RIW+ +G
Sbjct: 170 RTWTYIFGA---CC-----STTVFIPSFHNYRIWSFLG 199
>02_05_1071 - 33876061-33877308,33877593-33877898
Length = 517
Score = 26.6 bits (56), Expect = 8.2
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 406 RRAELVKAVRACGDSNKRLYFCGSSVSSSPP-TVKNTRN*GNCLFKFVI 263
RR+ L+ + N R + C SS SS+PP T + + G+ L + ++
Sbjct: 6 RRSRLLALLVGASRPNPRPFCCSSSSSSAPPATAREDGDGGDLLSRCLL 54
>02_05_1001 + 33423562-33424098
Length = 178
Score = 26.6 bits (56), Expect = 8.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 190 WMPADLYSRWVQNERA 143
W PAD+ + WV ERA
Sbjct: 101 WAPADVVAAWVSRERA 116
>01_06_0630 - 30723903-30724496
Length = 197
Score = 26.6 bits (56), Expect = 8.2
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +1
Query: 115 HVCCLRTWSLLFRSAPIC 168
HVCCL W S P+C
Sbjct: 146 HVCCLDAWLRRNASCPVC 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,304,544
Number of Sequences: 37544
Number of extensions: 212888
Number of successful extensions: 646
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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