Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S13A01NGRL0001_A08
(423 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70035-8|CAA93868.2| 446|Caenorhabditis elegans Hypothetical pr... 43 1e-04
U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase prote... 43 1e-04
Z70035-12|CAB76726.1| 150|Caenorhabditis elegans Hypothetical p... 42 2e-04
Z70035-6|CAA93866.1| 444|Caenorhabditis elegans Hypothetical pr... 36 0.016
Z70035-7|CAA93867.1| 369|Caenorhabditis elegans Hypothetical pr... 33 0.064
Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical pr... 29 1.0
U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical pr... 29 1.4
AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical ... 29 1.4
AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical ... 29 1.4
Z70683-1|CAA94590.1| 511|Caenorhabditis elegans Hypothetical pr... 29 1.8
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 28 2.4
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 28 2.4
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 28 2.4
AC006696-8|AAF39989.1| 120|Caenorhabditis elegans Hypothetical ... 27 5.5
AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exteri... 26 9.7
AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector ... 26 9.7
>Z70035-8|CAA93868.2| 446|Caenorhabditis elegans Hypothetical
protein R09D1.8 protein.
Length = 446
Score = 42.7 bits (96), Expect = 1e-04
Identities = 30/140 (21%), Positives = 67/140 (47%), Gaps = 1/140 (0%)
Frame = +3
Query: 6 SGLLAVARGTNHPASPSSQSKVLCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAG 185
+ + + + +PA+P +++ YY + +Q ++ D +S TH ++
Sbjct: 66 TSISSTVAASTYPATPGCNKRIIGYYFA------TQTSVITRD---QVSKLTHAVFAFVN 116
Query: 186 IQADTHKMVSLNENLDIDRAHANYRAITNL-KRQFPQLRVFLTVGGDDDTEDPQKYNLLL 362
+ +D H + D D A + + + K+Q PQ++V +++GG+D++ + + +L
Sbjct: 117 MTSDGHLQI------DGDLAKNRFTNLIEIAKQQTPQVKVMISIGGNDNSNN---FKPVL 167
Query: 363 ESPQARTAFTNSALLLAEQY 422
SP + F NS + + Y
Sbjct: 168 SSPDRKKLFINSTVSFLQTY 187
>U42835-2|AAA83586.1| 617|Caenorhabditis elegans Chitinase protein
1 protein.
Length = 617
Score = 42.7 bits (96), Expect = 1e-04
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +3
Query: 75 CYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTHKMVSLNENLDIDRA-HA 251
CY+ + + R+ +A+ +P D P L CTH+L+ + AD +L D A
Sbjct: 57 CYFTNWAQYRQGRAKFVPEDYTPGL--CTHILFAFGWMNADYTVRAYDPADLPNDWAGEG 114
Query: 252 NYRAITNLKRQFPQLRVFLTVGG 320
YR + LK QL+ L+ GG
Sbjct: 115 MYRRVNKLKVTDTQLKTLLSFGG 137
>Z70035-12|CAB76726.1| 150|Caenorhabditis elegans Hypothetical
protein R09D1.14 protein.
Length = 150
Score = 41.5 bits (93), Expect = 2e-04
Identities = 30/140 (21%), Positives = 67/140 (47%), Gaps = 1/140 (0%)
Frame = +3
Query: 6 SGLLAVARGTNHPASPSSQSKVLCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAG 185
+ + + + +PA+P +++ YY + +Q ++ +D +S TH ++
Sbjct: 24 TSISSTVAASTYPATPGCNKRIIGYYFA------TQTSVITSD---QVSNLTHAVFAFVN 74
Query: 186 IQADTHKMVSLNENLDIDRAHANYRAITNL-KRQFPQLRVFLTVGGDDDTEDPQKYNLLL 362
I +D + D D A + + + K+Q PQ++V +++GG+D++ + + +L
Sbjct: 75 ITSDGQLQI------DGDLAKNRFTNLIEIAKQQTPQVKVMISIGGNDNSNN---FKPVL 125
Query: 363 ESPQARTAFTNSALLLAEQY 422
SP + F NS + + Y
Sbjct: 126 SSPDRKKLFINSTVSFLQTY 145
>Z70035-6|CAA93866.1| 444|Caenorhabditis elegans Hypothetical
protein R09D1.6 protein.
Length = 444
Score = 35.5 bits (78), Expect = 0.016
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Frame = +3
Query: 147 LSFCTHLLYKSAGIQADTHKMVSLNENLDIDRAHANYRAITNL-KRQFPQLRVFLTVGGD 323
+S TH ++ + +D H + D D A + + + K+Q PQ++V +++GG+
Sbjct: 102 VSKLTHAVFAFVNMTSDGHLQI------DGDLAKNRFTNLIEIAKQQTPQVKVMISIGGN 155
Query: 324 DDTEDPQKYNLLLESPQARTAFTNSALLLAEQY 422
D++ + + L SP + F NS + + Y
Sbjct: 156 DNSNN---FKPGLSSPDRKKLFINSTVSFLQTY 185
>Z70035-7|CAA93867.1| 369|Caenorhabditis elegans Hypothetical
protein R09D1.7 protein.
Length = 369
Score = 33.5 bits (73), Expect = 0.064
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 276 KRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNSALLLAEQY 422
K+Q P ++V +++GGDD++ + K +L SP R F N+ + Y
Sbjct: 65 KQQTPPVKVMISIGGDDNSNNFYK---VLNSPNRRKVFLNATTSFLQIY 110
>Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical
protein M02G9.1 protein.
Length = 909
Score = 29.5 bits (63), Expect = 1.0
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = -1
Query: 210 PFYVCQLGCRQICTADGCRTKEQAPS 133
P VCQ CRQ C GC T EQ P+
Sbjct: 161 PPAVCQQTCRQSCQF-GCATNEQLPT 185
>U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical
protein C25A8.4 protein.
Length = 1067
Score = 29.1 bits (62), Expect = 1.4
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Frame = +3
Query: 111 QARMLPTDLEPALSFCTHLLYKSAGIQADT----HKMVSLNENLDIDRAHANYRAITNLK 278
+ R+ P L+ ++ CTHL+Y S I DT + + + DID N R L+
Sbjct: 37 KTRLSPNLLQN-ITTCTHLVYGSIPIDRDTGYPQYSVSDVESGYDID----NIRTFMRLR 91
Query: 279 RQFPQLRVFLTVGGDDDTED 338
+ P ++ + V ED
Sbjct: 92 KYHPNAKLLMGVVRTKPFED 111
>AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical
protein Y73F8A.9 protein.
Length = 419
Score = 29.1 bits (62), Expect = 1.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 198 CQLGCRQICTADGCRTKEQAPSP 130
CQ C+Q C C T+ AP+P
Sbjct: 103 CQSSCQQTCQTSSCYTQIAAPAP 125
>AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical
protein Y73F8A.8 protein.
Length = 420
Score = 29.1 bits (62), Expect = 1.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 198 CQLGCRQICTADGCRTKEQAPSP 130
CQ C+Q C C T+ AP+P
Sbjct: 104 CQSSCQQTCQTSSCYTQIAAPAP 126
>Z70683-1|CAA94590.1| 511|Caenorhabditis elegans Hypothetical
protein F13B12.1 protein.
Length = 511
Score = 28.7 bits (61), Expect = 1.8
Identities = 29/119 (24%), Positives = 50/119 (42%)
Frame = +3
Query: 24 ARGTNHPASPSSQSKVLCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTH 203
AR ++ PASPS+ S S S ++ M+ +D + S K A I +D
Sbjct: 60 ARDSSAPASPSAASPAGSRSPSPSPVKTKSKVMIDSDED---SDAEESANKRALIDSDAS 116
Query: 204 KMVSLNENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQAR 380
+ +D +++ + K++ +F DDD + P+K N L E + R
Sbjct: 117 DAEGKKRRVMLDSDDSDHEGTS--KKEPTTKNLFGDDSDDDDEDRPKKTNDLDEFVEGR 173
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +3
Query: 219 NENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLES 368
N D+D AH + R++ + + Q+ R L + D KY L + S
Sbjct: 1780 NLRTDLDNAHTDIRSLRDKEEQWDSSRFQLETKMRESDSDTNKYQLQIAS 1829
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +3
Query: 219 NENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLES 368
N D+D AH + R++ + + Q+ R L + D KY L + S
Sbjct: 1853 NLRTDLDNAHTDIRSLRDKEEQWDSSRFQLETKMRESDSDTNKYQLQIAS 1902
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +3
Query: 219 NENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLES 368
N D+D AH + R++ + + Q+ R L + D KY L + S
Sbjct: 1853 NLRTDLDNAHTDIRSLRDKEEQWDSSRFQLETKMRESDSDTNKYQLQIAS 1902
>AC006696-8|AAF39989.1| 120|Caenorhabditis elegans Hypothetical
protein W08E12.2 protein.
Length = 120
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 174 CTADGCRTKEQAPSP*AAYVLEIL*YSSCCHSSRGLCFGY 55
C+ + C AP +Y YSSCC+S+ C GY
Sbjct: 65 CSCNPCNGGGCAPR--CSYCPNNFGYSSCCNSNNFSCCGY 102
>AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exterior
protein 2 protein.
Length = 1262
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +1
Query: 55 VAKAKSSATMTAR---AISENLKHVCCLRTWSLLFRSAPICCTN 177
+AK AT A+ +SE L+H + TW R+ P+ +N
Sbjct: 56 IAKYSEEATRHAQFNDMLSEGLQHAANMYTWRCCSRAVPMAKSN 99
>AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector
protein.
Length = 1262
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +1
Query: 55 VAKAKSSATMTAR---AISENLKHVCCLRTWSLLFRSAPICCTN 177
+AK AT A+ +SE L+H + TW R+ P+ +N
Sbjct: 56 IAKYSEEATRHAQFNDMLSEGLQHAANMYTWRCCSRAVPMAKSN 99
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,250,199
Number of Sequences: 27780
Number of extensions: 176946
Number of successful extensions: 583
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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