Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S13A01NGRL0001_A07
(539 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 30 0.25
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha... 29 0.33
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 27 1.8
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 26 3.1
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 25 5.4
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc... 25 7.2
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 25 7.2
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 25 9.5
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 25 9.5
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 29.9 bits (64), Expect = 0.25
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 215 GNLSTGRSITLLSAKMKDPWYS*DRKRLTRANTNASLK 328
G+L G LL + PWY D R+TRA L+
Sbjct: 458 GDLHNGHYYALLKTEKDGPWYKYDDTRVTRATLREVLE 495
>SPAC57A10.02 |cdr2||GIN4 family protein kinase
Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 29.5 bits (63), Expect = 0.33
Identities = 26/98 (26%), Positives = 42/98 (42%)
Frame = +1
Query: 145 NPTVLECLIEGNDQGVKYSWQKDGKSFNWQEHNAALRKDEGSLVFLRPQASDEGQYQCFA 324
NP V + GN+Q +S D ++N NA + LR + + +
Sbjct: 534 NPRVTRFNV-GNEQ---FSNNIDNNNYNQPYANATMNNSRR----LRTPSGERSMRADLS 585
Query: 325 ETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQ 438
++PA S V R+ + SP+ T +K + G PFQ
Sbjct: 586 QSPASYDSLNVPKHRRRQSLFSPSSTKKK--LSGSPFQ 621
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 27.1 bits (57), Expect = 1.8
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +1
Query: 34 SKSIAVLSACIIVGSALPVDKYPVLKDQPAE 126
SKSIA L CI +G + P K PV+K Q E
Sbjct: 57 SKSIAKLDLCIELGRSYPYVK-PVIKLQNGE 86
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 26.2 bits (55), Expect = 3.1
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Frame = +3
Query: 6 EHQARVNNGV*EHSSIKRLH-NCGLS---ASRG*IPGAERPTGRGPLQGEQPNGPRMSHR 173
+ Q V+ GV E S++ +H N L AS P A+ PL P R S
Sbjct: 17 DFQFLVDEGVVERSALDWVHANIHLQDGPASPVTAPAAQPVESSVPL----PLPKRKSSV 72
Query: 174 RKRSGSQVLLAKGWEIFQLAGA*RCSPQR*RIPGIP 281
KR+GS + Q +G R + ++PG+P
Sbjct: 73 EKRAGSVASAVAAMSLSQNSGEKRTPEEPRKLPGVP 108
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 482 TWKKRLSGADPNADV 526
TW+KRL G N DV
Sbjct: 1468 TWRKRLEGCQKNVDV 1482
>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 387 IASEDTRENANRRQAFPIGLCAAERL 464
I + DT A RRQ F L AAER+
Sbjct: 474 IFNNDTLSRAERRQRFRQSLRAAERI 499
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 361 SFRKTYLIASPAKTHEKTP 417
+FRKTYL AS A H P
Sbjct: 585 AFRKTYLFASNAGIHINAP 603
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 24.6 bits (51), Expect = 9.5
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = +2
Query: 194 STPGKRMGNLSTGRSITLLSAKMKDPWYS*DRKRLTRA-NTNASLKPQPVLPARG 355
+ P R+G ++ RS L+ MKDP R T A N P P P G
Sbjct: 85 AVPTVRLGRSTSSRSRNSLNLDMKDPSEKPRRSLPTAAGQNNIGSPPTPPGPFPG 139
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 24.6 bits (51), Expect = 9.5
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = -3
Query: 495 RFFQVNQGFRVSVRLHTVQLERPA-FDW-RFLVCLRWRCDEVSLPEADHPRAGNTGWGFS 322
+ F+ N G + + H + +W +V L+ RC SL + DH +TG G
Sbjct: 153 KVFEENGGIYIKIGQHLSAMGYVIPKEWTNTMVKLQDRCPSTSLKDIDHLFRVDTGKGLD 212
Query: 321 E 319
E
Sbjct: 213 E 213
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,333,867
Number of Sequences: 5004
Number of extensions: 49686
Number of successful extensions: 157
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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