Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_A05
         (496 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC110602-1|AAI10603.1|  535|Homo sapiens EPN3 protein protein.         29   8.9  
AK000785-1|BAA91378.1|  632|Homo sapiens protein ( Homo sapiens ...    29   8.9  
AF324241-1|AAG45223.1|  632|Homo sapiens epsin 3 protein.              29   8.9  

>BC110602-1|AAI10603.1|  535|Homo sapiens EPN3 protein protein.
          Length = 535

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
 Frame = -2

Query: 495 PPPTVLVDGKWEMVGIFLVANAFADKSWSLL*NRFTLPATDNLSPIPGI*VFVRVAPWRL 316
           PP T      W++ G F      +  SW         P+ D  SPIP   V  R  PW L
Sbjct: 302 PPSTHCSADPWDIPG-FRPNTEASGSSWG--------PSADPWSPIPSGTVLSRSQPWDL 352

Query: 315 T--LS*TNPAVAAPNLIWLVRSTEPRALS 235
           T  LS + P    P L     +T+P AL+
Sbjct: 353 TPMLSSSEPWGRTPVLPAGPPTTDPWALN 381


>AK000785-1|BAA91378.1|  632|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20778 fis, clone COL05704. ).
          Length = 632

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
 Frame = -2

Query: 495 PPPTVLVDGKWEMVGIFLVANAFADKSWSLL*NRFTLPATDNLSPIPGI*VFVRVAPWRL 316
           PP T      W++ G F      +  SW         P+ D  SPIP   V  R  PW L
Sbjct: 313 PPSTHCSADPWDIPG-FRPNTEASGSSWG--------PSADPWSPIPSGTVLSRSQPWDL 363

Query: 315 T--LS*TNPAVAAPNLIWLVRSTEPRALS 235
           T  LS + P    P L     +T+P AL+
Sbjct: 364 TPMLSSSEPWGRTPVLPAGPPTTDPWALN 392


>AF324241-1|AAG45223.1|  632|Homo sapiens epsin 3 protein.
          Length = 632

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
 Frame = -2

Query: 495 PPPTVLVDGKWEMVGIFLVANAFADKSWSLL*NRFTLPATDNLSPIPGI*VFVRVAPWRL 316
           PP T      W++ G F      +  SW         P+ D  SPIP   V  R  PW L
Sbjct: 313 PPSTHCSADPWDIPG-FRPNTEASGSSWG--------PSADPWSPIPSGTVLSRSQPWDL 363

Query: 315 T--LS*TNPAVAAPNLIWLVRSTEPRALS 235
           T  LS + P    P L     +T+P AL+
Sbjct: 364 TPMLSSSEPWGRTPVLPAGPPTTDPWALN 392


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,057,426
Number of Sequences: 237096
Number of extensions: 1577111
Number of successful extensions: 2448
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2448
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4479766258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)