Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_A04
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    27   1.8  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    27   1.8  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    26   3.1  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    26   4.1  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   5.5  
SPAC14C4.08 |mug5||meiotically upregulated gene Mug5|Schizosacch...    25   7.2  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    25   7.2  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    25   9.5  

>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 308 VALEIPMMNLLAPSVFPKMF*QTVKATSI 394
           +A  +PM N+    + PK F +T+K T +
Sbjct: 546 IAAPLPMANVDTDKIIPKQFLKTIKRTGL 574


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 346 LGFSQDVLANRQSHEYFSELIHNLNSN 426
           +G S DV+ +   H YF  +I NL  N
Sbjct: 190 VGVSNDVMGSVPHHPYFELIIQNLEKN 216


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 345 PRFFPRCFSKPSKPRVFQRTNT*P*QQRHYV-EDTLRQCCICRHTQQATR 491
           PR + RC SKP   ++ Q  +  P  ++  V  D L + C   H  +A R
Sbjct: 325 PRVYSRCNSKPVSLKIQQLKSLYPSDKKLIVGRDQLTKACGVTHKLRAFR 374


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
 Frame = -2

Query: 261  NNVFIFVL--LHLLY*NFISQIVHRIC*VPIIY----YGSGNFFIIRLMRIPRTPIQKYY 100
            NNVF+F+L    L+Y      ++H +  +   +    Y    FF+  + + P  P  KY+
Sbjct: 1073 NNVFLFLLSFYSLIYGAEKPYLIHNVVGLYFFWLLFLYAKNGFFVQNISKWPIIPRMKYF 1132


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
 Frame = +1

Query: 310  SVGNTYDELASALGFSQDVLANRQSHEYFSELIHNLNSNDTMSKTL--YANAVFVDIHS- 480
            S+   Y E+A       ++L  + S+    ELI  ++ N +MSK L  Y +     I + 
Sbjct: 996  SLEECYQEVAYVADTWLEILFTKGSNLTDDELIELISENRSMSKALSEYGSQKSTSITTA 1055

Query: 481  -KLRDVFQDYLTRIYKGIA 534
             +L D   D +T+  KG+A
Sbjct: 1056 RRLADFLGDQMTK-DKGLA 1073


>SPAC14C4.08 |mug5||meiotically upregulated gene
           Mug5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 179

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 505 SLETHRVACCVCRQIQHWRK 446
           +L+T  + CC  R I+H+ K
Sbjct: 78  TLQTMLIFCCTLRMIEHYEK 97


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 337 ASALGFSQDVLANRQSHEYFSELIHNLNSNDTM 435
           +S++ F Q  +A  Q  +YF      LN N+ M
Sbjct: 376 SSSISFRQVCIAETQLQQYFLRFEKRLNGNNRM 408


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +1

Query: 397 SELIHNLNSNDTMSKTLYANAVFVDIHSKLRDVFQDYLTRIYKGIAVN 540
           +E IH L   + +++T +AN     +   +      YL + YK   +N
Sbjct: 198 AETIHGLRLGNNLTRTFWANDEPSPVDQNMYGSHPYYLEQRYKADGIN 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,065,366
Number of Sequences: 5004
Number of extensions: 39753
Number of successful extensions: 123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)