Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S13A01NGRL0001_A04
         (544 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502...    34   0.064
11_02_0012 - 7346282-7347136,7347234-7347593                           29   2.4  
01_06_1676 - 39084928-39085016,39085462-39085555,39085664-390857...    29   2.4  
03_05_0003 - 19430085-19430210,19430902-19431060,19431269-194313...    28   5.5  
11_04_0004 + 12013207-12013280,12013311-12013756,12013865-12014715     27   7.3  
03_05_0294 + 22855503-22855946,22856346-22856399                       27   7.3  
11_02_0011 - 7337618-7338496,7338596-7338991                           27   9.7  

>03_05_0293 +
           22849103-22849513,22849670-22849756,22850156-22850284,
           22850507-22851262,22853474-22854250
          Length = 719

 Score = 34.3 bits (75), Expect = 0.064
 Identities = 25/91 (27%), Positives = 34/91 (37%)
 Frame = +1

Query: 253 NIVISPXXXXXXXXXXXXXSVGNTYDELASALGFSQDVLANRQSHEYFSELIHNLNSNDT 432
           N+  SP             + G T D+LASALG            E   +L+    S   
Sbjct: 36  NVAFSPLSLHVALSLVAAGAGGATRDQLASALGGPGSAEGLHAFAEQLVQLVLADASGAG 95

Query: 433 MSKTLYANAVFVDIHSKLRDVFQDYLTRIYK 525
             +  +A+ VFVD    L+  F D     YK
Sbjct: 96  GPRVAFADGVFVDASLSLKKTFGDVAVGKYK 126


>11_02_0012 - 7346282-7347136,7347234-7347593
          Length = 404

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +1

Query: 241 NKNENIVISPXXXXXXXXXXXXXSVGNTYDELASALG 351
           N N N+V SP             + G T DEL + LG
Sbjct: 28  NSNRNVVFSPVSLYAALALVASGARGTTLDELVALLG 64


>01_06_1676 -
           39084928-39085016,39085462-39085555,39085664-39085750,
           39085941-39086073,39086451-39086724,39086863-39086989,
           39087095-39087345,39087476-39087575
          Length = 384

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = +1

Query: 136 ETNDEKVTTSIINDGNLA---YSVNDLGYKILIQKMQQNKNE 252
           E  D+  ++++I +G+     Y+V D G KI ++K+  N+NE
Sbjct: 68  EKTDDFGSSALIGEGSYGRVYYAVLDSGTKIAVKKLDSNENE 109


>03_05_0003 -
           19430085-19430210,19430902-19431060,19431269-19431358,
           19431433-19431603,19431655-19431797,19431831-19431923,
           19431963-19432279,19432819-19432885,19433039-19433204
          Length = 443

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 118 SSGNSHETNDEKVTTSIINDGNLAYSVND 204
           SSG SH  +DE+  T  + D NL   V D
Sbjct: 90  SSGGSHHGSDEEEVTMPVFDANLLAGVKD 118


>11_04_0004 + 12013207-12013280,12013311-12013756,12013865-12014715
          Length = 456

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 118 SSGNSHETNDEKVTTSIINDGNLAYSVND 204
           SSG SH  +DE+  T  + D NL   V D
Sbjct: 37  SSGGSHHGSDEEDVTMPVFDANLPAGVKD 65


>03_05_0294 + 22855503-22855946,22856346-22856399
          Length = 165

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
 Frame = +1

Query: 253 NIVISPXXXXXXXXXXXXXSVGNTYDELASALGFSQDVLANRQSHEYFSELIHNLNSNDT 432
           N+  SP             + G T D+L S LG      A    H +  +++  + ++ +
Sbjct: 45  NVAFSPLSLHVALSLVAAGAGGATRDQLVSLLGVPGRGTAEGL-HAFAEQVVQLVLADSS 103

Query: 433 MS---KTLYANAVFVDIHSKLRDVFQDYLTRIYK 525
            +   +  +A+ VF+D    L   F+D     YK
Sbjct: 104 PAGGPRVAFADGVFIDSSLSLMKSFKDVAVGKYK 137


>11_02_0011 - 7337618-7338496,7338596-7338991
          Length = 424

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 241 NKNENIVISPXXXXXXXXXXXXXSVGNTYDELASALG 351
           + N+N+V SP             + G T DEL + LG
Sbjct: 28  SSNKNLVFSPASLYAALALVAAGARGTTLDELLALLG 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,052,742
Number of Sequences: 37544
Number of extensions: 216565
Number of successful extensions: 419
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)