Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S13A01NGRL0001_A03
(492 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1455 + 27230134-27231110,27231195-27231327,27231417-272315... 31 0.38
04_02_0006 + 8455219-8457469,8457560-8457924 29 2.0
12_02_0412 - 18799217-18801061 28 3.5
09_01_0066 - 978018-978500,978588-979034,979113-979412,979521-97... 28 3.5
02_04_0519 + 23619084-23619198,23619468-23619559,23619655-236197... 28 3.5
05_04_0113 + 18085705-18085833,18086442-18086885 28 4.7
02_03_0247 - 16809742-16809780,16810070-16810298,16810381-168105... 28 4.7
12_02_0591 + 20864861-20867329 27 6.2
03_05_0520 + 25139314-25139364,25139580-25139711,25141594-251417... 27 6.2
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439... 27 8.2
10_08_0434 + 17896432-17896551,17896709-17896786,17898528-17898836 27 8.2
09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,724... 27 8.2
07_01_0725 - 5532803-5533324,5533631-5533657,5534285-5534398,553... 27 8.2
03_06_0262 + 32730927-32731634,32731713-32732159,32732247-327331... 27 8.2
01_01_0070 - 542603-542686,542803-543441 27 8.2
>08_02_1455 +
27230134-27231110,27231195-27231327,27231417-27231501,
27233372-27233571
Length = 464
Score = 31.5 bits (68), Expect = 0.38
Identities = 25/71 (35%), Positives = 32/71 (45%)
Frame = -3
Query: 346 NPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVP 167
+PG V +P P LSSA A AA S+ L S P A P +P P++P
Sbjct: 17 SPGQPPVVPRSPTPLDLSSAAAAAAAASYRRLSPSLRPPA------HPQARLPSPYPQIP 70
Query: 166 SELSVRAPCAS 134
S S A +S
Sbjct: 71 SSSSAAAAGSS 81
>04_02_0006 + 8455219-8457469,8457560-8457924
Length = 871
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = -3
Query: 379 FTLPAAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSL 206
F P +V+L N G+C ++ + P SS PA + LL+K I + +F +L
Sbjct: 437 FQRPNSVSLEGNKGLCANIHILNLPICPSS--PAKTKNNKRLLLKVIPSITIALFSAL 492
>12_02_0412 - 18799217-18801061
Length = 614
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 488 VYSATDSVEVGYISDIWHISGGESLRCDVV 399
+YS+ +E G D+W+I GG L V+
Sbjct: 23 IYSSETDLEEGVFHDVWNICGGMPLAMIVI 52
>09_01_0066 -
978018-978500,978588-979034,979113-979412,979521-979855,
980325-980703
Length = 647
Score = 28.3 bits (60), Expect = 3.5
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = -3
Query: 334 CVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSE- 161
C S L P ++ SA + P+ C L+ P F L A+G P PE
Sbjct: 467 CASTELAENPTSVDSAVDHITEPTSCTLIVRVMP----TFTVLAAEGLAYKPTPETRVHG 522
Query: 160 LSVRAPCASLR 128
+RA CA ++
Sbjct: 523 AQLRADCAKVQ 533
>02_04_0519 +
23619084-23619198,23619468-23619559,23619655-23619735,
23620426-23620501,23620674-23620696
Length = 128
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 457 GTLAISGIFLVAKAFAVMSWLSLWKRFTLPAAV 359
G LA+ IF + ++ W S+W+ FT A +
Sbjct: 63 GLLALGNIFFLTGIGLLLGWQSMWQLFTKKANI 95
>05_04_0113 + 18085705-18085833,18086442-18086885
Length = 190
Score = 27.9 bits (59), Expect = 4.7
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Frame = +3
Query: 96 EEPELLTSSRVRRDAHGALTLNSD-------GTSGAGVKVPFAGNDKNIVSAIGSLDL-- 248
E+ TS+R R G LT+ ++ G GAG ++P AG D + G +
Sbjct: 30 EDSPAATSTRKRLVGSGKLTIVAEIPRLALGGGGGAGERLPAAGEDSAAATNTGKCQVVG 89
Query: 249 TNRQKLGAATAGVALD 296
++ + AA+AG+ D
Sbjct: 90 SSLAAMVAASAGIQPD 105
>02_03_0247 -
16809742-16809780,16810070-16810298,16810381-16810551,
16810630-16811516,16811604-16812050,16812129-16812836
Length = 826
Score = 27.9 bits (59), Expect = 4.7
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = -3
Query: 334 CVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSE- 161
C S L P ++ SA + P+ C L P F L A+G P PE
Sbjct: 365 CASTELAENPTSIDSAVDHITEPTSCTLTVRVMP----TFTVLAAEGLAYKPTPETTVHG 420
Query: 160 LSVRAPCASLR 128
+RA CA ++
Sbjct: 421 AQLRADCAKVQ 431
>12_02_0591 + 20864861-20867329
Length = 822
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 371 AGSCHLVSEPGDVCIRETY 315
AG CHL EPG V +R +
Sbjct: 299 AGECHLAGEPGLVAVRRFF 317
>03_05_0520 +
25139314-25139364,25139580-25139711,25141594-25141731,
25143191-25143241,25143662-25143751,25143854-25144000,
25144108-25144218,25144307-25144375,25144777-25145517,
25145840-25146004,25146376-25146442,25146580-25146704,
25148714-25148983,25149065-25149199,25149316-25149497,
25149669-25149744
Length = 849
Score = 27.5 bits (58), Expect = 6.2
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -3
Query: 307 PFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPE-VPSELSVRAPCASL 131
P T+S++T AV+ + + + + T LPA T APE +P+ S AP S
Sbjct: 310 PTTISTSTAAVSVSAETISSPVRPIVPTTTAAVLPASVTARSAPENIPAVTS--APANSS 367
Query: 130 RTLE 119
TL+
Sbjct: 368 STLK 371
>11_01_0558 -
4396750-4396986,4397699-4398050,4398266-4398504,
4398608-4398709
Length = 309
Score = 27.1 bits (57), Expect = 8.2
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Frame = +3
Query: 69 EPVY--YIQHYE---EPELLTSSRVRRDAHGALTLNSDGTSGAGVKVPFAGND 212
EP Y + HY PEL+ R DA G + L D G +P G D
Sbjct: 157 EPFYGTKVSHYPPCPRPELVDGLRAHTDAGGLILLFQDDRFGGLQMIPNRGGD 209
>10_08_0434 + 17896432-17896551,17896709-17896786,17898528-17898836
Length = 168
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 408 TAKAFATRNMPDIANVPDFNTV 473
T K FA + DI VPDFNT+
Sbjct: 77 TIKNFAVIYLVDITEVPDFNTM 98
>09_02_0322 -
7240125-7241568,7242043-7243253,7245782-7246144,
7246502-7246522
Length = 1012
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 211 SLPAKGTLTPAPEVPSELSVRAP 143
S+P + +L PAP S+L V AP
Sbjct: 870 SIPVQNSLPPAPPSASQLQVHAP 892
>07_01_0725 -
5532803-5533324,5533631-5533657,5534285-5534398,
5534564-5534731,5535951-5536193,5537178-5537261,
5537357-5538117,5539637-5539730,5540633-5540899,
5541311-5541316,5542538-5542657
Length = 801
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 408 TAKAFATRNMPDIANVPDFNTV 473
T K FA + DI VPDFNT+
Sbjct: 53 TIKNFAVIYLVDITEVPDFNTM 74
>03_06_0262 +
32730927-32731634,32731713-32732159,32732247-32733133,
32733212-32733382,32733465-32733753,32733839-32733877,
32733983-32734021
Length = 859
Score = 27.1 bits (57), Expect = 8.2
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = -3
Query: 334 CVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSE- 161
C S L P ++ SA + P+ C L P F L A+G P PE
Sbjct: 365 CASTELAENPTSVDSAVDHITEPTSCTLTVRVMP----TFTVLAAEGLAYKPTPETRVHG 420
Query: 160 LSVRAPCASLR 128
+RA CA ++
Sbjct: 421 AQLRADCAKVQ 431
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 27.1 bits (57), Expect = 8.2
Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Frame = -3
Query: 319 LTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIF--LSLPAKGTLTPAPEVPSEL-SVR 149
+TP P T +P A P L + P+A +LP T P E P+EL
Sbjct: 100 VTPPPVTPPPVSPPPATPPPALPPSTPPPVAAPAEAPAALPPATTPPPVAEAPAELPPAE 159
Query: 148 APCASLRTLELVNSSG 101
AP S N G
Sbjct: 160 APTKSKNKHRKKNKRG 175
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,069,757
Number of Sequences: 37544
Number of extensions: 298529
Number of successful extensions: 993
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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