Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_P22
         (157 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q339J0 Cluster: Transposon protein, putative, CACTA, En...    32   2.8  
UniRef50_Q53K54 Cluster: Transposon protein, putative, CACTA, En...    31   6.4  
UniRef50_Q10FJ9 Cluster: Transposon protein, putative, CACTA, En...    31   6.4  
UniRef50_Q02317 Cluster: Major surface antigen precursor; n=7767...    31   6.4  
UniRef50_Q115T0 Cluster: WGR; n=1; Trichodesmium erythraeum IMS1...    30   8.5  
UniRef50_Q5GAN9 Cluster: AT hook-containing MAR binding 1-like p...    30   8.5  
UniRef50_Q2QWB8 Cluster: Transposon protein, putative, CACTA, En...    30   8.5  

>UniRef50_Q339J0 Cluster: Transposon protein, putative, CACTA,
           En/Spm sub-class; n=2; Oryza sativa (japonica
           cultivar-group)|Rep: Transposon protein, putative,
           CACTA, En/Spm sub-class - Oryza sativa subsp. japonica
           (Rice)
          Length = 728

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 45  KEARRKERPVTPEDW*ERSKRWQNSR 122
           +E R+K +PV  E+W +RSK W  +R
Sbjct: 179 EEMRKKGQPVLMEEWTQRSKNWVRAR 204


>UniRef50_Q53K54 Cluster: Transposon protein, putative, CACTA,
           En/Spm sub-class; n=5; Oryza sativa (japonica
           cultivar-group)|Rep: Transposon protein, putative,
           CACTA, En/Spm sub-class - Oryza sativa subsp. japonica
           (Rice)
          Length = 1154

 Score = 30.7 bits (66), Expect = 6.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 48  EARRKERPVTPEDW*ERSKRWQNS 119
           E R+K +PV  E+W +RS+ W+ S
Sbjct: 922 EIRKKGQPVPMEEWTQRSRNWKGS 945


>UniRef50_Q10FJ9 Cluster: Transposon protein, putative, CACTA,
           En/Spm sub-class; n=3; Oryza sativa (japonica
           cultivar-group)|Rep: Transposon protein, putative,
           CACTA, En/Spm sub-class - Oryza sativa subsp. japonica
           (Rice)
          Length = 834

 Score = 30.7 bits (66), Expect = 6.4
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 45  KEARRKERPVTPEDW*ERSKRWQNSR 122
           +E R+K +PV  E+W +RS+ W  +R
Sbjct: 180 EEMRKKGQPVPMEEWTQRSRNWVRAR 205


>UniRef50_Q02317 Cluster: Major surface antigen precursor; n=7767;
           Hepadnaviridae|Rep: Major surface antigen precursor -
           Hepatitis B virus subtype adw (strain Philippino /
           isolate pFDW294)(HBV)
          Length = 400

 Score = 30.7 bits (66), Expect = 6.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 125 LPRILPPFTPFLPVFWCNWPF 63
           L  IL PF P LP+F+C W +
Sbjct: 379 LYNILSPFIPLLPIFFCLWVY 399


>UniRef50_Q115T0 Cluster: WGR; n=1; Trichodesmium erythraeum
           IMS101|Rep: WGR - Trichodesmium erythraeum (strain
           IMS101)
          Length = 998

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 130 HLCREFCHLLLLSYQSSGVTGXXXXXXXXXLPSWQQN 20
           HL REF  +L++  +S GV           +P WQ+N
Sbjct: 696 HLAREFIDILVIPEKSEGVHDYLVNLLRNDIPGWQEN 732


>UniRef50_Q5GAN9 Cluster: AT hook-containing MAR binding 1-like
           protein; n=4; Poaceae|Rep: AT hook-containing MAR
           binding 1-like protein - Zea mays (Maize)
          Length = 442

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 110 PPFTPFLPVFWCNWPFFATGFFVTAILAT 24
           PP  P   +++C W FF  GF   A L+T
Sbjct: 232 PPIVPGTDMYYCAWGFFPMGFPKAADLST 260


>UniRef50_Q2QWB8 Cluster: Transposon protein, putative, CACTA,
           En/Spm sub-class; n=3; Oryza sativa (japonica
           cultivar-group)|Rep: Transposon protein, putative,
           CACTA, En/Spm sub-class - Oryza sativa subsp. japonica
           (Rice)
          Length = 925

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 45  KEARRKERPVTPEDW*ERSKRWQNSR 122
           +E R+K +PV  E+W +RS+ W   R
Sbjct: 295 EEMRKKGQPVPMEEWTQRSRNWVRGR 320


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,395,863
Number of Sequences: 1657284
Number of extensions: 1742478
Number of successful extensions: 6168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6166
length of database: 575,637,011
effective HSP length: 32
effective length of database: 522,603,923
effective search space used: 9929474537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)