Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_P22
         (157 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    26   0.58 
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    25   1.0  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    24   2.4  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    24   2.4  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    23   4.1  
SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces pombe...    23   4.1  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    23   5.4  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    22   9.5  

>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 0.58
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 5   MSATRVLLPRWQLQRSPSQRKAS 73
           M+ATR ++  W LQ +P  + A+
Sbjct: 499 MAATRCIVDTWMLQHAPQSKSAN 521


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 143 SSSLAPLPRILPPFTPFLPVFWCNWPFFATGFFVTAIL 30
           S+S  P+P +LPP  P L   +     F T F + A +
Sbjct: 645 STSHIPIPTVLPPTQPVLEPSYREIVAFITFFLLFAFI 682


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 65  FFATGFFVTAILATEHV*RSC 3
           FFA  FF T+++   H+ R C
Sbjct: 277 FFALQFFSTSLIQYTHICRKC 297


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 66  RPVTPEDW*ERSKRWQNSRQR 128
           R   P++W ER K W+  +++
Sbjct: 229 RDFYPDNWLERQKSWEEEKEQ 249


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 75   TPEDW*ERSKRWQNSR 122
            TP  W   SKRW++ R
Sbjct: 1466 TPSQWDSLSKRWRSMR 1481


>SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 342

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -1

Query: 145 NLPXWHLCREFCHLLLLSY 89
           NL  W +C + CH     Y
Sbjct: 161 NLDRWRVCLDTCHTFAAGY 179


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +3

Query: 36   GSYKEARRKERPVTPEDW*ERSKRWQNS 119
            G  K A++ ++    E W E+ +RW+++
Sbjct: 1282 GILKHAQQHDKMNLKETWYEKLQRWEDA 1309


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 134 LAPLPRILPPFTPFL 90
           L  L RI+ PFTPF+
Sbjct: 758 LFTLVRIMGPFTPFI 772


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 577,593
Number of Sequences: 5004
Number of extensions: 7216
Number of successful extensions: 28
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 32
effective length of database: 2,202,350
effective search space used: 41844650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)