Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_P22
         (157 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AC006618-5|ABB88234.1|  513|Caenorhabditis elegans Gaba/glycine ...    25   7.3  
AC006618-4|ABB88233.1|  546|Caenorhabditis elegans Gaba/glycine ...    25   7.3  
Z83219-5|CAM35834.1|  390|Caenorhabditis elegans Hypothetical pr...    25   9.6  
AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical...    25   9.6  
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical...    25   9.6  

>Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical protein
            F23D12.2 protein.
          Length = 1322

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +3

Query: 12   LHVFCCQDGSYKEARRKERPVTPED--W*ERS 101
            LH   C+D +++ +  K R + P D  W ER+
Sbjct: 1220 LHANTCRDPTFQRSNHKARDLKPSDGKWLERN 1251


>AC006618-5|ABB88234.1|  513|Caenorhabditis elegans Gaba/glycine
           receptor family (seegbr) protein 2, isoform b protein.
          Length = 513

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 145 NLPXWHLCREFCHLLLLSY 89
           NL  W L  + CHL +LSY
Sbjct: 159 NLEKWPLDSQRCHLRILSY 177


>AC006618-4|ABB88233.1|  546|Caenorhabditis elegans Gaba/glycine
           receptor family (seegbr) protein 2, isoform a protein.
          Length = 546

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 145 NLPXWHLCREFCHLLLLSY 89
           NL  W L  + CHL +LSY
Sbjct: 159 NLEKWPLDSQRCHLRILSY 177


>Z83219-5|CAM35834.1|  390|Caenorhabditis elegans Hypothetical
           protein C31C9.8 protein.
          Length = 390

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 157 KFKANLPXWHLCREFCHLL 101
           +F+ NLP +   + FCH+L
Sbjct: 19  EFRKNLPIFESFKNFCHVL 37


>AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical
            protein Y51H4A.12 protein.
          Length = 1677

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 30   QDGSYKEARRKERPVTP 80
            ++G  KEARR+ + VTP
Sbjct: 1238 EEGKRKEARRRSKSVTP 1254


>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
            protein F15E6.1 protein.
          Length = 1655

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 30   QDGSYKEARRKERPVTP 80
            ++G  KEARR+ + VTP
Sbjct: 1222 EEGKRKEARRRSKSVTP 1238


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,270,900
Number of Sequences: 27780
Number of extensions: 44201
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 12,740,198
effective HSP length: 32
effective length of database: 11,851,238
effective search space used: 225173522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)