Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_P21
         (170 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    23   7.1  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    22   9.4  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    22   9.4  

>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 71  TEAIPFQMKSLSNMFIN 121
           T+  P+Q KSLS MF N
Sbjct: 322 TQIRPYQEKSLSKMFGN 338


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 50  SSINHVRTEAIPFQMKSLSNMFINKTQEHMN 142
           +S +H  T+  PF+  S +N+F  + QE  N
Sbjct: 147 TSASHSLTDEQPFETDSSANLF-KQLQEKRN 176


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -2

Query: 121 IYKHVTKRFHLKWYGFGPH 65
           ++  +T +F L W+  G H
Sbjct: 406 VFYFITGKFLLSWFNLGSH 424


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 601,862
Number of Sequences: 5004
Number of extensions: 7213
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 37
effective length of database: 2,177,330
effective search space used: 41369270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)