Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_P20
         (89 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...    51   2e-08
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...    51   2e-08
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    23   4.1  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    23   5.4  
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom...    23   5.4  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 51.2 bits (117), Expect = 2e-08
 Identities = 20/27 (74%), Positives = 23/27 (85%)
 Frame = +1

Query: 7   KNVGLGFKTPREAVEGTYIDKKCPFTG 87
           K+VGLGFKTP EA+ G Y+DKKCPF G
Sbjct: 33  KDVGLGFKTPAEAIYGEYVDKKCPFVG 59


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 51.2 bits (117), Expect = 2e-08
 Identities = 20/27 (74%), Positives = 23/27 (85%)
 Frame = +1

Query: 7   KNVGLGFKTPREAVEGTYIDKKCPFTG 87
           K+VGLGFKTP EA+ G Y+DKKCPF G
Sbjct: 33  KDVGLGFKTPAEAIYGEYVDKKCPFVG 59


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 7   KNVGLGFKTPREAVEGTYIDK 69
           +N GLG K   E   G YID+
Sbjct: 116 ENSGLGSKYSTEIANGVYIDE 136


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 74  HFLSMYVPSTASRGVLKPRPTFL 6
           HF   Y P  A+   LK  PT+L
Sbjct: 227 HFAPYYYPQRATSPSLKQVPTYL 249


>SPCC1183.06 |ung1||uracil DNA N-glycosylase
           Ung1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +2

Query: 44  PLKAHTLIRNVH 79
           PLKAH ++R+VH
Sbjct: 255 PLKAHYVLRSVH 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.139    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 383,604
Number of Sequences: 5004
Number of extensions: 3134
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 2,362,478
effective HSP length: 11
effective length of database: 2,307,434
effective search space used: 41533812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)