Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_P20
         (89 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623...    63   3e-11
04_04_0417 - 25052305-25052398,25052583-25052672,25052740-250529...    63   3e-11
07_03_0920 - 22603868-22603964,22604110-22604222,22604281-226044...    61   1e-10
07_03_0919 - 22594980-22595111,22595398-22595427,22595522-225955...    61   1e-10
04_04_1135 + 31140032-31140043,31140552-31140592,31140680-311407...    61   1e-10
04_04_1134 + 31137326-31137337,31137964-31138004,31138089-311381...    61   1e-10

>08_01_0706 -
           6235817-6235988,6236028-6236338,6236421-6236627,
           6236718-6236889,6236994-6237249,6238015-6238073,
           6238693-6238782,6238869-6239013,6239598-6239712,
           6240690-6240701
          Length = 512

 Score = 62.9 bits (146), Expect = 3e-11
 Identities = 25/27 (92%), Positives = 27/27 (100%)
 Frame = +1

Query: 7   KNVGLGFKTPREAVEGTYIDKKCPFTG 87
           KN+GLGFKTPREA+EGTYIDKKCPFTG
Sbjct: 28  KNIGLGFKTPREAIEGTYIDKKCPFTG 54


>04_04_0417 -
           25052305-25052398,25052583-25052672,25052740-25052905,
           25053547-25053647,25053735-25053775,25054170-25054181
          Length = 167

 Score = 62.9 bits (146), Expect = 3e-11
 Identities = 25/27 (92%), Positives = 27/27 (100%)
 Frame = +1

Query: 7   KNVGLGFKTPREAVEGTYIDKKCPFTG 87
           KN+GLGFKTPREA+EGTYIDKKCPFTG
Sbjct: 37  KNIGLGFKTPREAIEGTYIDKKCPFTG 63


>07_03_0920 -
           22603868-22603964,22604110-22604222,22604281-22604429,
           22604732-22604832,22604917-22604957,22605584-22605595
          Length = 170

 Score = 60.9 bits (141), Expect = 1e-10
 Identities = 24/27 (88%), Positives = 27/27 (100%)
 Frame = +1

Query: 7   KNVGLGFKTPREAVEGTYIDKKCPFTG 87
           K++GLGFKTPREA+EGTYIDKKCPFTG
Sbjct: 37  KSIGLGFKTPREAIEGTYIDKKCPFTG 63


>07_03_0919 -
           22594980-22595111,22595398-22595427,22595522-22595587,
           22596021-22596107,22596868-22596921,22597696-22597762,
           22598099-22598215,22598536-22598637,22598784-22598902,
           22598966-22599049,22599220-22599354,22599470-22599505,
           22599581-22599700,22600557-22600645,22601507-22601596,
           22601629-22601802,22602135-22602235,22602323-22602363,
           22602872-22602883
          Length = 551

 Score = 60.9 bits (141), Expect = 1e-10
 Identities = 24/27 (88%), Positives = 27/27 (100%)
 Frame = +1

Query: 7   KNVGLGFKTPREAVEGTYIDKKCPFTG 87
           K++GLGFKTPREA+EGTYIDKKCPFTG
Sbjct: 37  KSIGLGFKTPREAIEGTYIDKKCPFTG 63


>04_04_1135 +
           31140032-31140043,31140552-31140592,31140680-31140780,
           31141113-31141419,31141565-31141661
          Length = 185

 Score = 60.9 bits (141), Expect = 1e-10
 Identities = 24/27 (88%), Positives = 27/27 (100%)
 Frame = +1

Query: 7   KNVGLGFKTPREAVEGTYIDKKCPFTG 87
           K++GLGFKTPREA+EGTYIDKKCPFTG
Sbjct: 37  KSIGLGFKTPREAIEGTYIDKKCPFTG 63


>04_04_1134 +
           31137326-31137337,31137964-31138004,31138089-31138189,
           31138489-31138637,31138696-31138808,31138954-31139050
          Length = 170

 Score = 60.9 bits (141), Expect = 1e-10
 Identities = 24/27 (88%), Positives = 27/27 (100%)
 Frame = +1

Query: 7   KNVGLGFKTPREAVEGTYIDKKCPFTG 87
           K++GLGFKTPREA+EGTYIDKKCPFTG
Sbjct: 37  KSIGLGFKTPREAIEGTYIDKKCPFTG 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.139    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,476,370
Number of Sequences: 37544
Number of extensions: 20387
Number of successful extensions: 51
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 14,793,348
effective HSP length: 11
effective length of database: 14,380,364
effective search space used: 258846552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)