Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_P20
         (89 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-1421|AAM71028.1|  155|Drosophila melanogaster CG8857-PC...    58   1e-09
AE013599-1420|AAF58552.1|  155|Drosophila melanogaster CG8857-PA...    58   1e-09
AE013599-1422|AAM71029.1|  154|Drosophila melanogaster CG8857-PB...    50   3e-07

>AE013599-1421|AAM71028.1|  155|Drosophila melanogaster CG8857-PC,
           isoform C protein.
          Length = 155

 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 23/28 (82%), Positives = 28/28 (100%)
 Frame = +1

Query: 4   SKNVGLGFKTPREAVEGTYIDKKCPFTG 87
           S++VGLGFKTPREA++GTYIDKKCP+TG
Sbjct: 34  SRDVGLGFKTPREAIDGTYIDKKCPWTG 61


>AE013599-1420|AAF58552.1|  155|Drosophila melanogaster CG8857-PA,
           isoform A protein.
          Length = 155

 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 23/28 (82%), Positives = 28/28 (100%)
 Frame = +1

Query: 4   SKNVGLGFKTPREAVEGTYIDKKCPFTG 87
           S++VGLGFKTPREA++GTYIDKKCP+TG
Sbjct: 34  SRDVGLGFKTPREAIDGTYIDKKCPWTG 61


>AE013599-1422|AAM71029.1|  154|Drosophila melanogaster CG8857-PB,
           isoform B protein.
          Length = 154

 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 18/27 (66%), Positives = 24/27 (88%)
 Frame = +1

Query: 7   KNVGLGFKTPREAVEGTYIDKKCPFTG 87
           + +GLGF+ P EA++GTYIDKKCP+TG
Sbjct: 34  RQIGLGFRAPAEAIDGTYIDKKCPWTG 60


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.316    0.139    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,237,609
Number of Sequences: 53049
Number of extensions: 36336
Number of successful extensions: 81
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 24,988,368
effective HSP length: 11
effective length of database: 24,404,829
effective search space used: 439286922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)