Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_P20
         (89 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    19   4.1  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    19   5.4  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    18   9.4  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    18   9.4  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 72  FLINVCAFNGLTGCLET 22
           +L + CA   LT CL +
Sbjct: 161 YLASKCALTTLTDCLRS 177


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 60  VCAFNGLTGCLET*TNILRM 1
           V    GL GCL     ILR+
Sbjct: 208 VGGLTGLIGCLTLGRRILRL 227


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
          protein.
          Length = 105

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -1

Query: 32 VLKPRPTF 9
          VL+PRP+F
Sbjct: 30 VLQPRPSF 37


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
          protein protein.
          Length = 135

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -1

Query: 32 VLKPRPTF 9
          VL+PRP+F
Sbjct: 32 VLQPRPSF 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.139    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,139
Number of Sequences: 438
Number of extensions: 286
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 11
effective length of database: 141,525
effective search space used:  2547450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.8 bits)