Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_P19
         (282 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    72   2e-14
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    71   3e-14
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    24   4.7  
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    24   4.7  
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    23   6.3  
SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy...    23   6.3  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 71.7 bits (168), Expect = 2e-14
 Identities = 28/63 (44%), Positives = 47/63 (74%)
 Frame = +2

Query: 89  GGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKGRGDGTHVINLRRTWERLVLAD 268
           G  ++L  ++ED+ ++LAA  H+G++N+  +M+ YV+K R DG H++NL +TWE+LVLA 
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 269 RAV 277
           R +
Sbjct: 65  RVI 67


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 70.9 bits (166), Expect = 3e-14
 Identities = 28/59 (47%), Positives = 45/59 (76%)
 Frame = +2

Query: 101 LLALSEEDVTKMLAATTHLGAENVNFQMETYVYKGRGDGTHVINLRRTWERLVLADRAV 277
           +L  +++D+  +LAA +H+G++N+  +ME YV+K R DG H+INL +TWE+LVLA R +
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVI 68


>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 256 KPFPCTPKINYVRTV 212
           KP PC+PK   V+T+
Sbjct: 350 KPLPCSPKSKRVKTL 364


>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 74  NATMSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKGRGD-GTHVIN 232
           N+T+SG  D  +++   +        +L A+N N Q E      R + G H+++
Sbjct: 204 NSTVSGSEDSASITTPSLRMREDVVAYLRADNKNLQYEPKSRSMRDETGYHMVD 257


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 250 FPCTPKINYVRTVTTAFIN 194
           F C  K++YV   TT F++
Sbjct: 38  FTCIDKLSYVSNYTTVFLS 56


>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 410

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 128 TKMLAATTHLGAENVNFQMETYVYKG 205
           T+ML A  ++  E VN  ++  VYKG
Sbjct: 331 TRMLLAANNVSQEVVNGVVKLSVYKG 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,149,460
Number of Sequences: 5004
Number of extensions: 20260
Number of successful extensions: 36
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)