Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_P19
(282 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 78 9e-16
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 75 6e-15
02_05_0757 + 31539660-31540859 28 1.3
06_01_0820 + 6202348-6203313 27 2.2
12_01_0183 - 1350451-1350477,1350887-1350969,1350977-1352696,135... 27 3.0
11_01_0183 - 1440460-1440467,1440832-1440957,1440965-1442858 27 3.0
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334... 26 3.9
02_02_0625 - 12339623-12339707,12339938-12340062,12340844-123409... 26 3.9
05_03_0331 + 12488005-12488454,12488561-12489505 26 5.2
07_03_0922 - 22612773-22613321,22613616-22614189,22614389-226144... 25 6.8
04_04_0157 + 23165638-23166633 25 6.8
04_03_0360 - 14906919-14907764 25 6.8
04_03_0330 - 14496906-14497751 25 6.8
03_05_0299 + 22887603-22887797,22887891-22887986,22888089-228881... 25 6.8
02_03_0077 + 14874273-14874571,14875304-14876150,14876878-148771... 25 6.8
10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111 25 9.0
05_05_0305 - 23970692-23970825,23972323-23973703 25 9.0
02_05_0036 - 25292150-25293124,25294021-25294206,25294704-252948... 25 9.0
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 78.2 bits (184), Expect = 9e-16
Identities = 36/68 (52%), Positives = 46/68 (67%)
Frame = +2
Query: 77 ATMSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKGRGDGTHVINLRRTWERL 256
A G L+ +E+DV MLAA HLG +N +FQME YVYK R DG ++INL +TWE+L
Sbjct: 3 AVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWEKL 62
Query: 257 VLADRAVV 280
LA R +V
Sbjct: 63 QLAARVIV 70
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 75.4 bits (177), Expect = 6e-15
Identities = 37/66 (56%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Frame = +2
Query: 89 GGLDLLALS--EEDVTKMLAATTHLGAENVNFQMETYVYKGRGDGTHVINLRRTWERLVL 262
GG ALS E+D+ MLAA HLG +N +FQME YVYK R DG ++INL +TWE+L L
Sbjct: 5 GGAAARALSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQL 64
Query: 263 ADRAVV 280
A R +V
Sbjct: 65 AARVIV 70
>02_05_0757 + 31539660-31540859
Length = 399
Score = 27.9 bits (59), Expect = 1.3
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = +2
Query: 5 FGTRERTSLASQWHYTRLVVTLTNATMS--GGLDLLALSEEDVTKMLAATTHL 157
FG+ ER AS W+Y L L L LS D++K+L A L
Sbjct: 171 FGSSERLLQASDWNYWLLTSDLEKVVEPNVSFLKECGLSARDISKLLVAAPRL 223
>06_01_0820 + 6202348-6203313
Length = 321
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 14 RERTSLASQWHYTRLVVTLTNATMSGG 94
R T A+QW T V L+NAT GG
Sbjct: 87 RAATPSAAQWWSTLATVYLSNATTGGG 113
>12_01_0183 -
1350451-1350477,1350887-1350969,1350977-1352696,
1354258-1354428,1355892-1355939
Length = 682
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 74 NATMSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKGRG 211
+A GG+D ++ +D T + + G EN + + VY G+G
Sbjct: 243 HAPAMGGIDYISSKNKDETLAVCIISSGGYENDDDDTDILVYTGQG 288
>11_01_0183 - 1440460-1440467,1440832-1440957,1440965-1442858
Length = 675
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 74 NATMSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKGRG 211
+A GG+D ++ +D T + + G EN + + VY G+G
Sbjct: 228 HAPAMGGIDYISSKNKDETLAVCIISSGGYENDDDDTDILVYTGQG 273
>09_04_0594 -
18831011-18831360,18831562-18832111,18832364-18833406,
18833496-18833760,18835194-18835340,18835431-18835511,
18835626-18835804,18835935-18836093,18836269-18836398,
18836935-18837094,18837337-18837419,18837865-18837915,
18838035-18838151,18838273-18838359
Length = 1133
Score = 26.2 bits (55), Expect = 3.9
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +2
Query: 44 HYTRLVVTLTNATMSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETY 193
HY + VT +G + L+ L +ED+ K L+A H E + MET+
Sbjct: 252 HYIKSQVTAA----TGAIALMQL-QEDLKKHLSAECHYTEEELEAYMETH 296
>02_02_0625 -
12339623-12339707,12339938-12340062,12340844-12340996,
12342037-12342102,12343374-12343443,12343523-12343593,
12343664-12343795,12344042-12344130,12344189-12344270,
12344743-12344811,12345641-12345730,12345856-12345918,
12346158-12346217
Length = 384
Score = 26.2 bits (55), Expect = 3.9
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -3
Query: 184 HLEINIFRSQMGGRRKHLSHIFLAER 107
HL ++ ++GG +HL H+F + R
Sbjct: 47 HLRSDVGCGEIGGNNRHLDHLFDSSR 72
>05_03_0331 + 12488005-12488454,12488561-12489505
Length = 464
Score = 25.8 bits (54), Expect = 5.2
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +3
Query: 150 PIWERKMLISRWRRT 194
P+WER++L +RW T
Sbjct: 197 PVWEREVLTARWPPT 211
>07_03_0922 -
22612773-22613321,22613616-22614189,22614389-22614466,
22615455-22615504,22616215-22616448
Length = 494
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 200 KGRGDGTHVINLRRTWERLVLADRAV 277
+GRG G V+ TWE LVL +
Sbjct: 28 RGRGGGGGVVGGWGTWEELVLGSAVI 53
>04_04_0157 + 23165638-23166633
Length = 331
Score = 25.4 bits (53), Expect = 6.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 249 SHVRRRLITCVPSPRPL 199
SH+RRRL+ +P+P L
Sbjct: 6 SHLRRRLLAAIPNPNLL 22
>04_03_0360 - 14906919-14907764
Length = 281
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 56 LVVTLTNATMSGGLDLLALSEEDVTKMLAATTHLGAE 166
L+++ TN T GG ++A + VT++LAAT E
Sbjct: 153 LLISGTNIT--GGAGVVAAYDRAVTELLAATVRYAVE 187
>04_03_0330 - 14496906-14497751
Length = 281
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 56 LVVTLTNATMSGGLDLLALSEEDVTKMLAATTHLGAE 166
L+++ TN T GG ++A + VT++LAAT E
Sbjct: 153 LLISGTNIT--GGAGVVAAYDRAVTELLAATVRYAVE 187
>03_05_0299 +
22887603-22887797,22887891-22887986,22888089-22888172,
22888573-22888733,22889458-22889575,22889914-22890049,
22890351-22890529,22890690-22890929
Length = 402
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 135 CLRRPPIWERKMLISRWR 188
C RRP IW R+ + SR R
Sbjct: 22 CSRRPEIWHRRRIGSRIR 39
>02_03_0077 +
14874273-14874571,14875304-14876150,14876878-14877147,
14877313-14878065
Length = 722
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 222 CVPSPRPL*TYVSIWKLTFSAPKW 151
C S P+ YV+ W+ T AP W
Sbjct: 667 CSSSSTPVKMYVAGWESTVDAPGW 690
>10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111
Length = 553
Score = 25.0 bits (52), Expect = 9.0
Identities = 20/73 (27%), Positives = 31/73 (42%)
Frame = -3
Query: 229 NYVRTVTTAFINVRLHLEINIFRSQMGGRRKHLSHIFLAERKQV*SSRHRCVCKSYD*TR 50
N V TT+F+ EI++ +S M + SH+ + + +RH V R
Sbjct: 206 NVVYPTTTSFVQQDTQCEISLIQSHMTTYFPNQSHLANVVNQGLTQTRHTSV-------R 258
Query: 49 IMPLGGETSSLPR 11
+ P G T S R
Sbjct: 259 VSPSVGRTVSATR 271
>05_05_0305 - 23970692-23970825,23972323-23973703
Length = 504
Score = 25.0 bits (52), Expect = 9.0
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +2
Query: 74 NATMSGGLDLLAL---SEEDVTKMLAATTHLGAENVNFQMETYVYKGRG 211
+A GG+D ++ S+ED + G ENV+ +T VY G G
Sbjct: 239 HAPSMGGIDYMSAKFGSDEDSVAICIVAAG-GYENVDDDTDTLVYSGSG 286
>02_05_0036 -
25292150-25293124,25294021-25294206,25294704-25294874,
25295135-25295353,25295461-25295712,25295802-25295903,
25296487-25296684,25296762-25297046,25297640-25297709,
25297797-25297970,25298825-25298952,25299059-25299163,
25299686-25300030,25300361-25300563,25300964-25301045,
25301667-25301744
Length = 1190
Score = 25.0 bits (52), Expect = 9.0
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 20 RTSLASQWHYTRLVVTLTNATMSGGLDLLALSEEDVTKMLAATTHLGAE 166
RTSL +Y+RLV TL+ LL++ EE+ ++ + E
Sbjct: 514 RTSLELLPYYSRLVATLSTCMKDVPSMLLSMLEEEFNFLINKKDQINIE 562
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,404,978
Number of Sequences: 37544
Number of extensions: 163391
Number of successful extensions: 285
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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