Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_P19
         (282 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   2.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   2.9  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   3.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    20   6.7  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
          beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 94 SSRHRCVCKSYD*TRIMP 41
          +S H C  K+ D T+IMP
Sbjct: 20 NSPHTCRTKNGDYTKIMP 37


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 2.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 187 LHLEINIFRSQMGGRRKHLSHI 122
           LHLE N  R   G   + LSH+
Sbjct: 847 LHLEDNRIRELKGFEFERLSHL 868


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 20.6 bits (41), Expect = 3.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 212 HHGLYKRTSPS 180
           HHGL+  +SPS
Sbjct: 810 HHGLHINSSPS 820


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 19.8 bits (39), Expect = 6.7
 Identities = 9/48 (18%), Positives = 23/48 (47%)
 Frame = -3

Query: 280 DNSTISEYKPFPCTPKINYVRTVTTAFINVRLHLEINIFRSQMGGRRK 137
           D++ +  Y        I YV+  T + +++R+ +      + + G+R+
Sbjct: 336 DHAVLCVYMGLSMVEAIKYVQQTTNSPVDMRVGIHTGAVLAGVLGQRQ 383


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,919
Number of Sequences: 438
Number of extensions: 1604
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5494764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)