Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_P18
(204 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 75 1e-15
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 37 4e-04
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 33 0.005
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 32 0.012
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 31 0.016
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 31 0.016
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 31 0.016
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom... 31 0.016
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 31 0.021
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 30 0.036
SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|... 29 0.064
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 29 0.064
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 28 0.15
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 28 0.19
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 28 0.19
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 27 0.26
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 27 0.26
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 0.26
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 27 0.34
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 27 0.45
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 27 0.45
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 26 0.79
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 25 1.0
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz... 25 1.0
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo... 25 1.0
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 25 1.4
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 25 1.4
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo... 25 1.8
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 24 2.4
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch... 24 3.2
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 24 3.2
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 23 4.2
SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 23 4.2
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 23 5.5
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 23 5.5
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 23 7.3
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 23 7.3
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 22 9.7
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr... 22 9.7
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 22 9.7
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 22 9.7
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 74.9 bits (176), Expect = 1e-15
Identities = 30/54 (55%), Positives = 42/54 (77%)
Frame = +3
Query: 39 MSETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGL 200
M E L LR TL GH+GW+T ++T P+ PD++LS SRDK++I+W L RD+ NYG+
Sbjct: 1 MPEQLVLRATLEGHSGWVTSLSTAPENPDILLSGSRDKSIILWNLVRDDVNYGV 54
Score = 26.2 bits (55), Expect = 0.59
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +3
Query: 75 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKL 173
GH + ++ +P ++ S SRDKT+ +W +
Sbjct: 103 GHTSDVLSVSISPDNRQVV-SGSRDKTIKIWNI 134
Score = 24.2 bits (50), Expect = 2.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 69 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNY 194
L GH+ +++ A + LS+S DKT+ +W L + E +
Sbjct: 59 LTGHSHFVSDCALSFD-SHYALSASWDKTIRLWDLEKGECTH 99
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 36.7 bits (81), Expect = 4e-04
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = +3
Query: 69 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGL 200
L GH W+ + +P +MILSSS D ++IVW+ +TN G+
Sbjct: 264 LMGHEDWVMSVDWHPT-KEMILSSSADSSMIVWE---PDTNTGI 303
Score = 31.9 bits (69), Expect = 0.012
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Frame = +3
Query: 69 LCGHNGWIT---QIATNPKYPD-MILSSSRDKTLIVWKLTRD 182
+ GH+G I ++ATN +Y ILS + DKTL +W+L +
Sbjct: 47 MAGHSGRINCVCELATNSEYRSPFILSGASDKTLRLWQLEEE 88
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 33.1 bits (72), Expect = 0.005
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 66 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTR 179
TL GH +T+I+ +P ++ S+S D+ +VW L+R
Sbjct: 320 TLEGHEDIVTKISFSPHEEPILASTSADRRTLVWDLSR 357
Score = 28.7 bits (61), Expect = 0.11
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 78 HNGWITQIATNPKYPDMILSSSRDKTLIVWKL 173
H+G I +A NP ++ + S DKT+ +W L
Sbjct: 280 HSGPIHSVAFNPHNDFILATCSTDKTIALWDL 311
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 31.9 bits (69), Expect = 0.012
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 66 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGL 200
T GH+ ++ +A NPK + SS D T+ VW N+ L
Sbjct: 136 TFEGHSRYVMSLAINPKDTNTFASSCLDGTVKVWSFGSSVANFTL 180
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 31.5 bits (68), Expect = 0.016
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 54 KLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVW 167
KL +LCGH ++ + +YP ILS S D+T+ +W
Sbjct: 86 KLLFSLCGHMDYVRVCTFHHEYP-WILSCSDDQTIRIW 122
Score = 29.1 bits (62), Expect = 0.084
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 66 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTR 179
T GH ++ +P + ++ILS+S DKT+ VW L R
Sbjct: 251 TCRGHFNNVSCCLFHP-HQELILSASEDKTIRVWDLNR 287
Score = 28.7 bits (61), Expect = 0.11
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +3
Query: 69 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLT 176
L GH+ ++ A +P D+I+S+S D+T+ VW ++
Sbjct: 133 LTGHSHYVMCAAFHPS-EDLIVSASLDQTVRVWDIS 167
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 31.5 bits (68), Expect = 0.016
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +3
Query: 66 TLCGHNGWITQIA-TNPKYPDMILSSSRDKTLIVWKLT 176
TL GH+G + Q+ +PK+ ++ S+S D +IVW+ T
Sbjct: 48 TLRGHSGPVWQLGWAHPKFGTILASASYDGHVIVWRET 85
Score = 29.1 bits (62), Expect = 0.084
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Frame = +3
Query: 24 WGFIKMSETLKLRGTLCGHNGWITQIATNPKY---PDMILSSSRDKTLIVW 167
W F L TL GH W +A P + S+S+DK + +W
Sbjct: 186 WAFDAGVNNWILEDTLAGHVDWTRDVAWAPSVGLTKTYLASASQDKNVFIW 236
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 31.5 bits (68), Expect = 0.016
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 45 ETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVW 167
E+ KL TL GH + +A NP P S+ D T+ +W
Sbjct: 458 ESGKLLATLSGHVKCVNYVAYNPVDPYQFASAGDDNTVRIW 498
>SPAC890.04c |||ribosome biogenesis protein Ytm1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 31.5 bits (68), Expect = 0.016
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 66 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVW 167
TL GH ++ ++ +P+ P M S S D T VW
Sbjct: 350 TLSGHKNLVSGLSASPENPYMFASVSHDNTCRVW 383
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 31.1 bits (67), Expect = 0.021
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +3
Query: 42 SETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKL 173
S T LR L GH G + + +P + D+ILS S D+T+ + +L
Sbjct: 297 SATGDLRYVLPGHEGSVNHVDFHP-HQDIILSCSSDRTIFLGEL 339
Score = 22.6 bits (46), Expect = 7.3
Identities = 7/22 (31%), Positives = 13/22 (59%)
Frame = +3
Query: 135 SSSRDKTLIVWKLTRDETNYGL 200
S D+ +++W + D NYG+
Sbjct: 67 SGGMDRQILLWNVFGDVKNYGV 88
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 30.3 bits (65), Expect = 0.036
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +3
Query: 45 ETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLP 203
+T K TL GH + Q A + +++SSS+D TL VW + + + LP
Sbjct: 419 KTGKFLATLRGHVAAVYQCAWSTD-SRLLVSSSQDTTLKVWDVRSKKMKFDLP 470
Score = 25.0 bits (52), Expect = 1.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 66 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVW 167
TL GH IT + + + I SSS DKT+ +W
Sbjct: 264 TLSGHTAPITCVRWGGQ--NWIYSSSYDKTIRIW 295
>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 29.5 bits (63), Expect = 0.064
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 75 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYG 197
GH ++ I +P D +S++ DKTL +WK+ + G
Sbjct: 106 GHTDIVSSIEVSP-IEDQFVSTANDKTLKLWKMNQSSRCLG 145
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 29.5 bits (63), Expect = 0.064
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 63 GTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKL 173
G L GH WI +A NP D++LS+ + + +W +
Sbjct: 223 GQLRGHAAWIFAVAFNP-VGDLLLSADVEGKIKIWDI 258
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 28.3 bits (60), Expect = 0.15
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +3
Query: 69 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVW 167
L H+G I+ ++ NP P + + S D+ + +W
Sbjct: 379 LQAHDGPISCLSVNPSVPSFVATGSTDRVVKLW 411
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.9 bits (59), Expect = 0.19
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = +3
Query: 75 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDET 188
GH + NP + ++ S D +++WK+ D T
Sbjct: 79 GHTAAVLDTDWNPFHDQVLASGGDDSKIMIWKVPEDYT 116
Score = 24.2 bits (50), Expect = 2.4
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +3
Query: 69 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVW 167
L GH+ + + +P +++ SSS D T+ +W
Sbjct: 130 LKGHSRKVGLVQYHPTAANVLASSSADNTIKLW 162
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 27.9 bits (59), Expect = 0.19
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 75 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKL 173
GH + IA +P ++LS S DKT+ VW+L
Sbjct: 482 GHKESVYSIAFSPD-SSILLSGSLDKTIKVWEL 513
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 27.5 bits (58), Expect = 0.26
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 78 HNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNY 194
H+ ++T IA +PK LS S D L +W + ++
Sbjct: 348 HSDFVTSIAFHPKDDRFFLSGSLDCKLRLWSIKEKAVSF 386
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 27.5 bits (58), Expect = 0.26
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 66 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWK 170
TL GH + ++A D+I+S+S D TL VWK
Sbjct: 572 TLRGHTDSVREVAC---LGDLIVSASYDGTLRVWK 603
Score = 24.6 bits (51), Expect = 1.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 120 PDMILSSSRDKTLIVWKL 173
P I+SSSRD T+ +W L
Sbjct: 522 PPYIISSSRDCTIRLWSL 539
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.5 bits (58), Expect = 0.26
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +3
Query: 69 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGLP 203
L GH ++ P+ P +LSS +D +VW + E+ P
Sbjct: 256 LTGHQKAALSLSWCPEDPTFLLSSGKDGRAMVWNVETGESLGSFP 300
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 27.1 bits (57), Expect = 0.34
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 75 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTR 179
GH+ I + P +LS SRDKT+ VW + +
Sbjct: 187 GHSSVIRGLTFEPT-GSFLLSGSRDKTVQVWNIKK 220
Score = 26.6 bits (56), Expect = 0.45
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Frame = +3
Query: 75 GHNGWITQIATNPK----YPDMILSSSRDKTL 158
GH +T +A P YP + SSS+D+TL
Sbjct: 408 GHTASVTAVALGPLDVNGYPTFLASSSQDRTL 439
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 26.6 bits (56), Expect = 0.45
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 129 ILSSSRDKTLIVWKLTRDETNYGLP 203
I+S SRD TL VWKL ++ LP
Sbjct: 460 IVSGSRDHTLRVWKLPKNTDPPYLP 484
Score = 24.2 bits (50), Expect = 2.4
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 69 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNYGL 200
L GH+ I + P+ ++ +S S DK++ VW L+ Y L
Sbjct: 543 LRGHSLRIYSVLYEPER-NICISGSMDKSIRVWDLSTGTCKYVL 585
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 26.6 bits (56), Expect = 0.45
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 78 HNGWITQIATNPKYPDMILSSSRDKTLIVWKL 173
H+ I +A NP ++ ++S DKT+ +W L
Sbjct: 280 HSKAINAVAINPFNDYLLATASADKTVALWDL 311
Score = 25.4 bits (53), Expect = 1.0
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +3
Query: 66 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTR 179
TL GH + + +P ++ SSS D+ + +W L +
Sbjct: 320 TLEGHEDEVYGLEWSPHDEPILASSSTDRRVCIWDLEK 357
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 25.8 bits (54), Expect = 0.79
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 75 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKL 173
GH + + + Y I+SSSRD T VW+L
Sbjct: 301 GHTDNVLGVVVSENY---IISSSRDHTARVWRL 330
Score = 23.0 bits (47), Expect = 5.5
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 69 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLT 176
L GH + + + K +I+++S D+TL W +T
Sbjct: 343 LRGHLASVNSVQYSSK-TGLIVTASSDRTLRTWDIT 377
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 25.4 bits (53), Expect = 1.0
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = +3
Query: 66 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETNY 194
+L GH G + + PK ++ S S D T +W + + +++
Sbjct: 184 SLSGHTGNVLAVDWCPKNEFVLASGSADGTCRLWDIRKVSSSF 226
>SPAC4D7.05 |sum1|tif34|translation initiation factor
eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 25.4 bits (53), Expect = 1.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 69 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVW 167
L GH +TQI N D++ S ++DK + VW
Sbjct: 6 LQGHERPLTQIKYNHD-GDLLFSCAKDKVINVW 37
>SPAC25H1.06 |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 1.0
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +3
Query: 24 WGFIKMSETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWK 170
W F K + L GH G + ++ +P I S + D L +WK
Sbjct: 357 WNFNKANP---LEFVHAGHKGTVNEVDFDPFEAQCIASVADDNELHIWK 402
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 25.0 bits (52), Expect = 1.4
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +3
Query: 36 KMSETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDE 185
K+ + + L GH + IA + + + + SRDK++ +W+ T D+
Sbjct: 363 KIDDDWECTAALEGHENEVKCIAWSCN-GNYLATCSRDKSVWIWEATEDD 411
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 25.0 bits (52), Expect = 1.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 69 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDE 185
L HNG + + +P + S RDKT+ +W T ++
Sbjct: 217 LAAHNGVVLCVNYSPNGV-FLASCGRDKTIRIWDSTSNK 254
>SPCC63.06 |||human WDR89 family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 331
Score = 24.6 bits (51), Expect = 1.8
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +3
Query: 42 SETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDE 185
SE +R HN IT + +PK +++L+ S D + + T++E
Sbjct: 133 SEQKLIRQWNDAHNDDITHLQFHPKDNELLLTGSVDGLVSLLDTTKEE 180
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 24.2 bits (50), Expect = 2.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 132 LSSSRDKTLIVWKLTRDETNYGL 200
LS S DKT+ VW L+ Y L
Sbjct: 140 LSGSDDKTVKVWDLSTGAVQYDL 162
>SPAC4F10.18 |||WD repeat protein, human NUP37
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 23.8 bits (49), Expect = 3.2
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Frame = +3
Query: 48 TLKLRGTLCGHNGWITQI-------ATNPKYPDMILSSSRDKTLIVWKLT 176
T + G GH+ ++ I A N +I S D TLI+W+LT
Sbjct: 123 TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT 172
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 23.8 bits (49), Expect = 3.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 75 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETN 191
GH +T+I Y ++SSS D+T+ VW L N
Sbjct: 304 GHYESVTKILQWKSY---LISSSLDQTIRVWDLEYSADN 339
Score = 22.2 bits (45), Expect = 9.7
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = +3
Query: 75 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKL 173
GH + + +P+ + + ++S DKT+ W L
Sbjct: 220 GHQSNVYCLLFDPQDSEALWTASADKTVREWSL 252
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 23.4 bits (48), Expect = 4.2
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 51 LKLRGTLC-GHNGWITQIATNPKYPDMILSSSRDKTLIVW 167
L + LC G G+I + A + D +LS S TL VW
Sbjct: 410 LAMAFVLCFGALGYICESAQSDTVFDWLLSISNLATLFVW 449
>SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 140
Score = 23.4 bits (48), Expect = 4.2
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 18 AHWGFIKMSETLKLRGTLCGHNGW 89
A W F+K+ +TL++ +C + W
Sbjct: 82 ATWSFMKLLKTLRIVIYICTSDHW 105
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = +3
Query: 75 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDET 188
GH I+ + P ++LS S D + +W++ D +
Sbjct: 264 GHTKGISCLRFFPISGHLLLSGSMDNQIKIWEVYHDRS 301
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +3
Query: 69 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKL 173
L GH +T + + + PD++ + S D ++ W L
Sbjct: 318 LHGHTRAVTDMNWHRQNPDVLATCSIDSSVHCWDL 352
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 22.6 bits (46), Expect = 7.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +3
Query: 108 NPKYPDMILSSSRDKTLIVWK 170
NP +P +L + LIVW+
Sbjct: 305 NPAFPPRLLLVDLSRNLIVWE 325
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 22.6 bits (46), Expect = 7.3
Identities = 12/43 (27%), Positives = 18/43 (41%)
Frame = +3
Query: 45 ETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKL 173
E K L GH I + P P++ ++ DK +W L
Sbjct: 135 EQAKAISVLKGHEMDIVSLDFLPSNPNLFVTGGCDKLAKLWDL 177
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 22.2 bits (45), Expect = 9.7
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = +3
Query: 87 WITQIATNPKY 119
W+ +I +NPKY
Sbjct: 416 WVNEIESNPKY 426
>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 22.2 bits (45), Expect = 9.7
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +3
Query: 144 RDKTLI-VWKLTRDETNYGLP 203
+DKT V K+ +DE NY LP
Sbjct: 186 KDKTNAHVNKIPQDEVNYSLP 206
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 22.2 bits (45), Expect = 9.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 84 GWITQIATNPKYPDMILSSSR 146
GW + NPK P+M+ +SS+
Sbjct: 159 GW-GHASENPKLPEMLSASSK 178
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 22.2 bits (45), Expect = 9.7
Identities = 8/36 (22%), Positives = 16/36 (44%)
Frame = +3
Query: 78 HNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDE 185
H + ++ NP + ++ S D +W +T E
Sbjct: 60 HKDSVFSVSINPVHSNLCASGGGDDLGYIWDITTGE 95
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 825,366
Number of Sequences: 5004
Number of extensions: 12505
Number of successful extensions: 88
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 47
effective length of database: 2,127,290
effective search space used: 42545800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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