Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_P18
         (204 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   1.5  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   1.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   3.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   3.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            19   4.5  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    19   5.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    19   7.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              19   7.8  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 1.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 107 SRNLSNPAIMATKRASEF*CFTHFYKSPVSSP 12
           +R  S+P ++ T+  +EF     +YKS  + P
Sbjct: 280 NRTNSDPRMILTEAYTEFNLTIKYYKSGSTVP 311


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 20.6 bits (41), Expect = 1.9
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -2

Query: 122 RVFRISRNLSNPAIMATKRASEF*CFTHFYKSP 24
           R+F  S+N++       K    F  F  F K+P
Sbjct: 160 RIFTSSQNIAVIEYRIPKSGKGFSLFARFLKNP 192


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.8 bits (39), Expect = 3.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 142  HEIKLLSCGN 171
            HE+K L CGN
Sbjct: 1460 HELKGLLCGN 1469



 Score = 18.6 bits (36), Expect = 7.8
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +3

Query: 42  SETLKLRGTLCGHNGWITQIATNP 113
           S  L +      H+G  T +A NP
Sbjct: 671 SSLLSITNLAAEHSGDYTCVAANP 694


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.8 bits (39), Expect = 3.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 142  HEIKLLSCGN 171
            HE+K L CGN
Sbjct: 1456 HELKGLLCGN 1465


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 19.4 bits (38), Expect = 4.5
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 87  WITQIATNPKYPDMI 131
           WIT+  T  ++ DM+
Sbjct: 87  WITRSGTREQFIDMV 101


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 19.0 bits (37), Expect = 5.9
 Identities = 5/7 (71%), Positives = 7/7 (100%)
 Frame = +1

Query: 130 FCLHHEI 150
           +CLHH+I
Sbjct: 21  YCLHHKI 27


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +3

Query: 120 PDMILSSSRDKTLIVWKLTRDETNY 194
           PD++L ++ D    V   T+   NY
Sbjct: 109 PDIVLYNNADGNFEVTLATKATLNY 133


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 5/7 (71%), Positives = 7/7 (100%)
 Frame = +1

Query: 133 CLHHEIK 153
           CLHH+I+
Sbjct: 150 CLHHDIE 156


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,050
Number of Sequences: 438
Number of extensions: 832
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  2785926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)