Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_P16
(333 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce... 59 2e-10
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac... 59 2e-10
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi... 48 3e-07
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc... 28 0.43
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 26 1.7
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc... 25 2.3
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi... 25 2.3
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo... 25 3.0
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 25 4.0
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch... 25 4.0
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch... 25 4.0
SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual 24 5.3
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 24 7.0
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c... 24 7.0
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe... 24 7.0
SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomy... 23 9.2
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 23 9.2
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ... 23 9.2
>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 149
Score = 59.3 bits (137), Expect = 2e-10
Identities = 23/47 (48%), Positives = 34/47 (72%)
Frame = +3
Query: 57 MKIGLCAYSGYKIYPGHGKTLVKVDGKTFTFLNSKCEAVHLMRRNPR 197
MK+ +C++SG K+YPG G+ V+ D K F F+N K E++ L R+NPR
Sbjct: 1 MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPR 47
Score = 55.2 bits (127), Expect = 2e-09
Identities = 26/39 (66%), Positives = 29/39 (74%)
Frame = +1
Query: 202 VTWTVLYRRRFPKGHEEEQAKKRARRTQKFQRAIVGASL 318
++WTVLYRR KG EE AKKR RRT K QR IVGA+L
Sbjct: 49 LSWTVLYRRMHKKGISEEHAKKRTRRTVKHQRGIVGANL 87
>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
L24|Schizosaccharomyces pombe|chr 3|||Manual
Length = 149
Score = 59.3 bits (137), Expect = 2e-10
Identities = 23/47 (48%), Positives = 34/47 (72%)
Frame = +3
Query: 57 MKIGLCAYSGYKIYPGHGKTLVKVDGKTFTFLNSKCEAVHLMRRNPR 197
MK+ +C++SG K+YPG G+ V+ D K F F+N K E++ L R+NPR
Sbjct: 1 MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPR 47
Score = 55.2 bits (127), Expect = 2e-09
Identities = 26/39 (66%), Positives = 29/39 (74%)
Frame = +1
Query: 202 VTWTVLYRRRFPKGHEEEQAKKRARRTQKFQRAIVGASL 318
++WTVLYRR KG EE AKKR RRT K QR IVGA+L
Sbjct: 49 LSWTVLYRRMHKKGISEEHAKKRTRRTVKHQRGIVGANL 87
>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 48.4 bits (110), Expect = 3e-07
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = +3
Query: 57 MKIGLCAYSGYKIYPGHGKTLVKVDGKTFTFLNSKCEAVHLMRRNPR 197
M++ C + +YPGHG V+ D K F F SKC M+RNPR
Sbjct: 1 MRVHTCYFCSGPVYPGHGIMFVRNDSKVFRFCRSKCHKNFKMKRNPR 47
>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 27.9 bits (59), Expect = 0.43
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 155 VQECECLAVHLNQGFSMARIDLVATVSAKTDLHFD 51
+++ + +V +NQ A DL+AT+S LH+D
Sbjct: 392 IEQLQSYSVLINQAIGDAISDLLATISVLNALHWD 426
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 25.8 bits (54), Expect = 1.7
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Frame = +2
Query: 140 IHILELQM*SCPFDEEKSPCK*HGPFYTD-----VDSQRGTKKNRPRNVQEGHKSSSVQL 304
+ ++ L PFD +KS P++ D VDS + + NRP NV G S L
Sbjct: 71 MRLVALAQEKLPFDYKKSG---KIPYFADIHISGVDSSKFVQLNRPNNVSSGDGSDGSFL 127
Query: 305 *ELHSHDI 328
+ S ++
Sbjct: 128 PPISSDEM 135
>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 553
Score = 25.4 bits (53), Expect = 2.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 214 VLYRRRFPKGHEEE 255
+LY R PKGHEE+
Sbjct: 300 ILYLRHAPKGHEED 313
>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 624
Score = 25.4 bits (53), Expect = 2.3
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = -3
Query: 250 LRAPLGIYVCIERSMLLTRGFLLIKWTASHLEFKNVNVLPSTLTRVFPWPG 98
+ +P Y R LTR L + T S +F + V+ S PWPG
Sbjct: 237 ISSPTFNYDYFARKAFLTRNKPLPEKTGSFQQFLDGFVVASKFFAQHPWPG 287
>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 3.0
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -1
Query: 306 YNCTLELLCPSCTFLGLFFFVPLWESTSV*NGPC 205
YNC +++ C LF +PL+ S N C
Sbjct: 308 YNCGIDMWSLGCILAELFLGLPLFPGNSEYNQLC 341
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 24.6 bits (51), Expect = 4.0
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +3
Query: 171 VHLMRRNPRVSNMDRSIQT*IPK---GARRRTGQETCKKDTKV 290
+H + R R ++ +PK G + T E+CKKD V
Sbjct: 411 IHRIGRTARAGKPGTAMSFVVPKSEVGKHKPTSLESCKKDESV 453
>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 587
Score = 24.6 bits (51), Expect = 4.0
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3
Query: 75 AYSGYKIYPGHGKTLV 122
AY+GYK+Y G+G ++
Sbjct: 154 AYNGYKVYWGNGCAII 169
>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 667
Score = 24.6 bits (51), Expect = 4.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 8 LTLTILTPIFFVSWSQNEDRSLRLQ 82
L + I P+FF + SQ EDR RL+
Sbjct: 543 LVVRIPEPLFFANVSQLEDRLNRLE 567
>SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 24.2 bits (50), Expect = 5.3
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 26 TPIFFVSWSQNEDRS-LRLQWLQDLSWP 106
T I + NE+ S ++ +WL ++SWP
Sbjct: 130 TAILLTMYLDNENFSEIQKKWLPNMSWP 157
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 23.8 bits (49), Expect = 7.0
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 212 PFYTDVDSQRGTKKNR 259
PF+ D D+ R KKN+
Sbjct: 515 PFFKDKDASRNNKKNK 530
>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 23.8 bits (49), Expect = 7.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 295 AGTFVSFLHVSWPVLLRAPLGIY 227
AG + H+S+PVL R+ GI+
Sbjct: 107 AGRAGAVYHISFPVLSRSSFGIW 129
>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 23.8 bits (49), Expect = 7.0
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = +3
Query: 42 FRGVKMKIGLCAYSGYKIY--PGHGKTLVKVDGKT 140
+RG + + + GYKIY GK K+ G T
Sbjct: 8 YRGKAALLSIGTFDGYKIYNCDPFGKCFHKIQGAT 42
>SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 23.4 bits (48), Expect = 9.2
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 208 MLLTRGFLLIKWTASHLEFK-NVNVLPSTL 122
+ L GF+ ++WTAS + VLP+ L
Sbjct: 102 LALAHGFVSMRWTASKVHHSAEKTVLPNPL 131
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 23.4 bits (48), Expect = 9.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 208 WTVLYRRRFPKGHEEEQAKKRARRTQK 288
+T+L FP+ +E +AKK RT K
Sbjct: 486 FTMLPSSTFPQRLQEAEAKKLQERTSK 512
>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 878
Score = 23.4 bits (48), Expect = 9.2
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -3
Query: 172 TASHLEFKNVNVLPSTLTRVFP 107
+ + FKN++ LP T T++ P
Sbjct: 736 SVEQIPFKNISSLPDTYTKLKP 757
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,531,105
Number of Sequences: 5004
Number of extensions: 32438
Number of successful extensions: 99
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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