Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_P16
(333 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1199 + 11391638-11391718,11393477-11393590,11393690-113938... 47 3e-06
05_05_0279 - 23794964-23795111,23795486-23795634,23796120-237962... 47 3e-06
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731... 46 1e-05
07_01_0849 + 6896930-6896996,6897453-6897474,6897615-6897690,689... 45 1e-05
03_02_0981 + 12917195-12917572,12917661-12917818,12918732-129187... 29 1.2
03_02_0536 - 9284079-9286034 28 2.1
01_07_0324 - 42731581-42731696,42731791-42731926,42732006-427320... 28 2.1
07_01_1013 - 8593690-8595006,8595275-8595928,8595951-8596065,859... 27 2.8
11_05_0105 + 19096185-19096193,19096534-19097253 27 4.9
06_01_0401 + 2873557-2874049,2874526-2874746,2875226-2875873 27 4.9
05_03_0649 - 16566815-16567392,16567491-16567623,16568000-165687... 27 4.9
01_06_0946 + 33220910-33222221,33223373-33223734,33223863-332240... 27 4.9
12_02_1045 + 25656495-25656566,25657788-25657884,25658327-256584... 26 6.4
08_02_0733 + 20546072-20546325,20546924-20547017,20547441-205476... 26 6.4
04_04_1473 - 33843414-33843788,33843833-33844261,33845738-33846100 26 6.4
05_03_0644 + 16527364-16527961,16528048-16528622,16528710-16528877 26 8.5
04_04_0962 + 29728983-29729034,29729622-29731369,29731656-297317... 26 8.5
01_06_0276 - 28084746-28085003,28085103-28085357,28085531-280857... 26 8.5
>07_01_1199 +
11391638-11391718,11393477-11393590,11393690-11393826,
11393905-11394064
Length = 163
Score = 47.2 bits (107), Expect = 3e-06
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = +3
Query: 57 MKIGLCAYSGYKIYPGHGKTLVKVDGKTFTFLNSKCEAVHLMRRNPR 197
M++ C + +YPGHG V+ D K F F SKC M+RNPR
Sbjct: 1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPR 47
>05_05_0279 -
23794964-23795111,23795486-23795634,23796120-23796221,
23796309-23796384,23796578-23796588
Length = 161
Score = 47.2 bits (107), Expect = 3e-06
Identities = 20/46 (43%), Positives = 26/46 (56%)
Frame = +3
Query: 57 MKIGLCAYSGYKIYPGHGKTLVKVDGKTFTFLNSKCEAVHLMRRNP 194
+K LC +SG KIYPG G ++ D + F F NSKC+ R P
Sbjct: 3 LKTELCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKP 48
Score = 43.2 bits (97), Expect = 5e-05
Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = +1
Query: 193 PV*VTWTVLYRRRFPKGHEEEQAKKRARRTQK-FQRAIVGASL 318
P +TWT +YR++ K E KKR R T+K + R+IVGASL
Sbjct: 48 PAKLTWTAMYRKQHKKDIHAEAVKKRRRTTKKPYSRSIVGASL 90
>01_06_1123 + 34671365-34671883,34672366-34672625,34673045-34673143,
34673237-34675178,34675588-34675658,34676158-34676307,
34676963-34677038,34677131-34677232,34677707-34677855,
34678214-34678364
Length = 1172
Score = 45.6 bits (103), Expect = 1e-05
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = +3
Query: 69 LCAYSGYKIYPGHGKTLVKVDGKTFTFLNSKCEAVHLMRRNP 194
LC +SG KIYPG G ++ D + F F NSKC+ R P
Sbjct: 1017 LCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKP 1058
Score = 41.9 bits (94), Expect = 1e-04
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = +1
Query: 193 PV*VTWTVLYRRRFPKGHEEEQAKKRARRTQK-FQRAIVGASL 318
P +TWT +YR++ K E KKR R T+K + R+IVGA+L
Sbjct: 1058 PAKLTWTAMYRKQHKKDIHAEAVKKRRRTTKKPYSRSIVGATL 1100
>07_01_0849 +
6896930-6896996,6897453-6897474,6897615-6897690,
6897775-6897876,6898156-6898304,6898637-6898784
Length = 187
Score = 45.2 bits (102), Expect = 1e-05
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = +3
Query: 51 VKMKIGLCAYSGYKIYPGHGKTLVKVDGKTFTFLNSKCEAVHLMRRNP 194
+K+ LC +SG KIYPG G ++ D + F F NSKC+ R P
Sbjct: 27 LKVWTELCRFSGAKIYPGKGIRFIRADSQVFLFSNSKCKRYFHNRLKP 74
Score = 41.9 bits (94), Expect = 1e-04
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = +1
Query: 193 PV*VTWTVLYRRRFPKGHEEEQAKKRARRTQK-FQRAIVGASL 318
P +TWT +YR++ K E KKR R T+K + R+IVGA+L
Sbjct: 74 PAKLTWTAMYRKQHKKDIHAEAVKKRRRTTKKPYSRSIVGATL 116
>03_02_0981 + 12917195-12917572,12917661-12917818,12918732-12918765,
12918942-12919074,12919167-12919221,12919281-12920064,
12920440-12920769,12920788-12920895,12921259-12921678,
12921775-12921847,12922291-12922376,12922873-12922992,
12923086-12923156,12923350-12923449
Length = 949
Score = 28.7 bits (61), Expect = 1.2
Identities = 18/79 (22%), Positives = 29/79 (36%)
Frame = -2
Query: 302 IARWNFCVLLARFLACSSSCPFGNLRLYRTVHVTYTGISPHQMDSFTFGVQECECLAVHL 123
I W F + + + CPF L TV + +SP + QE CL
Sbjct: 826 IEPWTFQQHIGEAVFVPAGCPFQVKNLQSTVQLALDFLSPESLGESARMAQEIRCLPNDH 885
Query: 122 NQGFSMARIDLVATVSAKT 66
+ M I ++ +A +
Sbjct: 886 DAKLKMLEIGKISLYAASS 904
>03_02_0536 - 9284079-9286034
Length = 651
Score = 27.9 bits (59), Expect = 2.1
Identities = 25/69 (36%), Positives = 30/69 (43%)
Frame = -2
Query: 278 LLARFLACSSSCPFGNLRLYRTVHVTYTGISPHQMDSFTFGVQECECLAVHLNQGFSMAR 99
LL RFLAC P G + R V V I +SF CE LAV L++ F M
Sbjct: 245 LLDRFLACR---PTGGAKHSRMVLVALYQIV---RESFQLYADICEVLAVLLDRFFDMEY 298
Query: 98 IDLVATVSA 72
+ V A
Sbjct: 299 AECVKAFEA 307
>01_07_0324 -
42731581-42731696,42731791-42731926,42732006-42732098,
42732189-42732290,42732383-42732516,42732593-42732707,
42733534-42733560,42733692-42733799,42733890-42733982,
42734066-42734365
Length = 407
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 135 KTFTFLNSKCEAVHLMRRNPRVSN 206
+TF ++ EAVHLM NP +N
Sbjct: 277 RTFVYIKDAIEAVHLMIENPARAN 300
>07_01_1013 -
8593690-8595006,8595275-8595928,8595951-8596065,
8596560-8596861,8596884-8597369
Length = 957
Score = 27.5 bits (58), Expect = 2.8
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = -3
Query: 232 IYVCIERSMLLTRGFLLIKWTASHLEFKNVNVLPSTLTRVFPWPG*IL*PL*AQRPIFIL 53
+ C + M+ T FLL+ W S + + + ST + VFP P P Q P+ IL
Sbjct: 738 VMACCDFDMIFT--FLLVGWPGSVHDMRVFHNAMSTYSHVFPHP-----PPGTQLPVVIL 790
>11_05_0105 + 19096185-19096193,19096534-19097253
Length = 242
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 233 SQRGTKKNRPRNVQEGHKSSSVQL*ELHSH 322
S RGT++ R R + +GH S+ +L E H
Sbjct: 44 SVRGTRQYRQRPIGDGHMPSAAELREAGIH 73
>06_01_0401 + 2873557-2874049,2874526-2874746,2875226-2875873
Length = 453
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = -1
Query: 252 FFVPLWESTSV*NGPCYLHGDFSSSN---GQLHIWSSR 148
FF P++E + GPC+L D S+ QL W +R
Sbjct: 137 FFCPIFEGSLHVEGPCHLDPDILSTEHLLPQLPKWKNR 174
>05_03_0649 -
16566815-16567392,16567491-16567623,16568000-16568765,
16569242-16569260,16569320-16569367,16569401-16569506
Length = 549
Score = 26.6 bits (56), Expect = 4.9
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -3
Query: 271 HVSWPVLLRAPLGIYVCIE 215
H+ WP LR +G+ C+E
Sbjct: 363 HLDWPTRLRVAVGVAYCLE 381
>01_06_0946 +
33220910-33222221,33223373-33223734,33223863-33224073,
33224174-33224411,33224492-33224642,33224733-33224997,
33231775-33231820,33232167-33232815,33232883-33233384,
33235023-33235360,33235466-33235676,33235769-33235992,
33236042-33236115,33236147-33236234,33236316-33236612
Length = 1655
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -2
Query: 221 YRTVHVTYTGISPHQMDSFTFGVQECECLAVHLNQGFSMARIDL 90
Y + G+ + D ++FGV E + N+GF A +DL
Sbjct: 710 YMSPEYAMDGVFSMKSDVYSFGVLVLEIVTGRRNRGFYEAELDL 753
>12_02_1045 +
25656495-25656566,25657788-25657884,25658327-25658419,
25658524-25658644,25659115-25659181,25659261-25659302,
25659455-25659583,25659674-25659733,25659887-25659929,
25660198-25660280,25660496-25661002,25661088-25661588
Length = 604
Score = 26.2 bits (55), Expect = 6.4
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +3
Query: 117 LVKVDGKTFTFLNSKCEAVHLMRRNPR-VSNMDRSIQT*IPKGARRRTGQETCKKDTKVP 293
++ + G FTF + KC VH R V +DR+ +T + K K++ K+
Sbjct: 509 MLDLSGHRFTFNDKKCCIVHKDGLELRGVGKLDRATRTYLLKPGEDSRAAAAAKEEPKML 568
Query: 294 ACNCRSF 314
A +
Sbjct: 569 AAAAEGY 575
>08_02_0733 + 20546072-20546325,20546924-20547017,20547441-20547624,
20547722-20547831,20548328-20548423,20548525-20548679,
20548743-20548986,20549159-20549314,20549600-20549829,
20552213-20552316,20552420-20552505,20552776-20553066,
20553383-20553475,20553640-20553735,20553838-20553939,
20554196-20554266,20554784-20555035,20555786-20556529,
20557038-20557119,20557192-20557347,20557446-20557655,
20558282-20558665
Length = 1397
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +2
Query: 179 DEEKSPCK*HGPF--YTDVDSQRGTKKNR 259
D K+P HGP DV Q+GT+K+R
Sbjct: 1310 DSYKAPSSEHGPEGPSQDVSQQKGTRKSR 1338
>04_04_1473 - 33843414-33843788,33843833-33844261,33845738-33846100
Length = 388
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +1
Query: 202 VTWTVLYRRRFPKGHEEEQAKKRARRTQKFQRA 300
+T+ +YRR+ + E + KK+A+ ++ Q+A
Sbjct: 329 ITFAEMYRRKMARDLELAKLKKKAKEQRQLQQA 361
>05_03_0644 + 16527364-16527961,16528048-16528622,16528710-16528877
Length = 446
Score = 25.8 bits (54), Expect = 8.5
Identities = 17/58 (29%), Positives = 23/58 (39%)
Frame = +3
Query: 96 YPGHGKTLVKVDGKTFTFLNSKCEAVHLMRRNPRVSNMDRSIQT*IPKGARRRTGQET 269
Y GHG + D F +C A+H +N + D + T A RR Q T
Sbjct: 23 YCGHGSEYAEDDADDGFFTCRQCSAIHTSTQNTATNPFDFPM-TPAHLSAHRRPTQPT 79
>04_04_0962 +
29728983-29729034,29729622-29731369,29731656-29731742,
29732035-29732199,29732437-29732526,29732863-29733027,
29733124-29733418,29733550-29733764,29733879-29733947,
29734107-29734184,29734466-29734529,29734658-29734897,
29734985-29735124
Length = 1135
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 292 GTFVSFLHVSWPVLLRAPLGIYVCI 218
GT + +VSWPVL+ I +CI
Sbjct: 742 GTILIISYVSWPVLIIFIPSILICI 766
>01_06_0276 -
28084746-28085003,28085103-28085357,28085531-28085798,
28085948-28086253,28086369-28086643,28087034-28087252,
28087486-28089015,28089236-28089397,28089512-28089666,
28090195-28091064,28091363-28091832,28091917-28091981,
28092105-28092448,28092531-28092710,28092817-28092920,
28093053-28093162,28093648-28093744,28094138-28094238,
28094324-28094476,28094561-28094674,28094795-28094884,
28094960-28095307
Length = 2157
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/41 (24%), Positives = 21/41 (51%)
Frame = +2
Query: 125 GGRQDIHILELQM*SCPFDEEKSPCK*HGPFYTDVDSQRGT 247
GG++D ++ L + + + PC+ G +Y D+ + T
Sbjct: 256 GGKRDFYMCSLSSRTIVYKGQLKPCQLKGYYYADLGHENFT 296
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,147,554
Number of Sequences: 37544
Number of extensions: 218388
Number of successful extensions: 607
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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