Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_P16
(333 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003151-13|AAK18907.1| 159|Caenorhabditis elegans Ribosomal pr... 62 1e-10
Z75525-5|CAA99764.1| 162|Caenorhabditis elegans Hypothetical pr... 44 3e-05
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 27 2.5
Z71265-5|CAA95836.1| 481|Caenorhabditis elegans Hypothetical pr... 27 2.5
AL132949-40|CAN99706.1| 329|Caenorhabditis elegans Hypothetical... 27 2.5
AL132949-39|CAB61094.1| 295|Caenorhabditis elegans Hypothetical... 27 2.5
Z68006-8|CAA91999.1| 1328|Caenorhabditis elegans Hypothetical pr... 27 3.3
Z68005-6|CAA91994.1| 1328|Caenorhabditis elegans Hypothetical pr... 27 3.3
Z82090-3|CAD98728.1| 1516|Caenorhabditis elegans Hypothetical pr... 27 4.3
Z82090-2|CAB05007.2| 1501|Caenorhabditis elegans Hypothetical pr... 27 4.3
Z82090-1|CAB05006.1| 1508|Caenorhabditis elegans Hypothetical pr... 27 4.3
Z46343-6|CAL36520.1| 366|Caenorhabditis elegans Hypothetical pr... 27 4.3
Z46343-5|CAA86458.2| 356|Caenorhabditis elegans Hypothetical pr... 27 4.3
Z77666-5|CAB01230.1| 729|Caenorhabditis elegans Hypothetical pr... 26 5.7
Z49968-1|CAA90258.2| 499|Caenorhabditis elegans Hypothetical pr... 26 5.7
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 26 5.7
U97407-6|AAB52481.1| 751|Caenorhabditis elegans Tyrosinase prot... 26 7.5
AF068709-3|AAC19254.1| 332|Caenorhabditis elegans Serpentine re... 26 7.5
Z81564-5|CAB04569.1| 656|Caenorhabditis elegans Hypothetical pr... 25 10.0
Z49913-2|CAA90143.1| 660|Caenorhabditis elegans Hypothetical pr... 25 10.0
U40958-5|AAA81764.1| 654|Caenorhabditis elegans Hypothetical pr... 25 10.0
>AF003151-13|AAK18907.1| 159|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 24.1 protein.
Length = 159
Score = 61.7 bits (143), Expect = 1e-10
Identities = 27/47 (57%), Positives = 32/47 (68%)
Frame = +3
Query: 57 MKIGLCAYSGYKIYPGHGKTLVKVDGKTFTFLNSKCEAVHLMRRNPR 197
MK+ C YSGYKI+PGHGK LV+ DGK FL+ K +RRNPR
Sbjct: 1 MKVETCVYSGYKIHPGHGKRLVRTDGKVQIFLSGKALKGAKLRRNPR 47
Score = 33.9 bits (74), Expect = 0.028
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +1
Query: 202 VTWTVLYRRRFPKG-HEEEQA--KKRARRTQKFQRAIVGASL 318
+ WTVLYR + KG H +EQ KK + Q RA+ G SL
Sbjct: 49 IRWTVLYRIKNKKGTHGQEQVTRKKTKKSVQVVNRAVAGLSL 90
>Z75525-5|CAA99764.1| 162|Caenorhabditis elegans Hypothetical
protein C03D6.8 protein.
Length = 162
Score = 44.0 bits (99), Expect = 3e-05
Identities = 25/78 (32%), Positives = 36/78 (46%)
Frame = +3
Query: 57 MKIGLCAYSGYKIYPGHGKTLVKVDGKTFTFLNSKCEAVHLMRRNPRVSNMDRSIQT*IP 236
M+I C + IYPGHG V+ D F F S+C + ++NPR +
Sbjct: 1 MRIEKCYFCSSPIYPGHGIQFVRNDSTVFKFCRSRCNKLFKKKKNPR--------KLRFT 52
Query: 237 KGARRRTGQETCKKDTKV 290
K ARR G+E T++
Sbjct: 53 KAARRARGKELINDATQL 70
>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
protein F29G6.1 protein.
Length = 1170
Score = 27.5 bits (58), Expect = 2.5
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +3
Query: 195 RVSNMDRSIQT*IPKGA--RRRTGQETCKKDTK-VPACNCRSFTHMT 326
+++ +D S+ GA R++ TC KD K +P C+ R+ TH T
Sbjct: 284 KINKIDGSVIDIAHSGACRARKSTCITCPKDEKKIPICDNRNMTHPT 330
>Z71265-5|CAA95836.1| 481|Caenorhabditis elegans Hypothetical
protein M05B5.6 protein.
Length = 481
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = -3
Query: 256 VLLRAPLGIYVCIERSMLLTRGFLLIKWTASHLEFKNVNVLPSTLTRVFPWP 101
++ ++P GIY+ + +L + + W + + F +L T V PWP
Sbjct: 207 IMRKSPFGIYIFMMTRILRSFAHIATIWIPTLIAFSFAFLLIMRDTGVKPWP 258
>AL132949-40|CAN99706.1| 329|Caenorhabditis elegans Hypothetical
protein Y53F4B.39b protein.
Length = 329
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = +3
Query: 90 KIYPGHGKTLVKVDGKTFTFLNSKC----EAVHLMRRNPRVSNMD 212
+IYPGHG + KV K ++ + E + +++ + +++MD
Sbjct: 224 RIYPGHGPVIDKVVEKVDEYIEHRMKREREIIKVLKEHEEITSMD 268
>AL132949-39|CAB61094.1| 295|Caenorhabditis elegans Hypothetical
protein Y53F4B.39a protein.
Length = 295
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = +3
Query: 90 KIYPGHGKTLVKVDGKTFTFLNSKC----EAVHLMRRNPRVSNMD 212
+IYPGHG + KV K ++ + E + +++ + +++MD
Sbjct: 190 RIYPGHGPVIDKVVEKVDEYIEHRMKREREIIKVLKEHEEITSMD 234
>Z68006-8|CAA91999.1| 1328|Caenorhabditis elegans Hypothetical
protein K09C8.5 protein.
Length = 1328
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 165 EAVHLMRRNPRVSNMDRSIQT*IPKGARRRTGQETCK 275
E + + RRN R + D +I+ I K R +G TC+
Sbjct: 481 EGIRIPRRNTRYTISDNNIELTIEKVTRHDSGVFTCQ 517
>Z68005-6|CAA91994.1| 1328|Caenorhabditis elegans Hypothetical
protein K09C8.5 protein.
Length = 1328
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 165 EAVHLMRRNPRVSNMDRSIQT*IPKGARRRTGQETCK 275
E + + RRN R + D +I+ I K R +G TC+
Sbjct: 481 EGIRIPRRNTRYTISDNNIELTIEKVTRHDSGVFTCQ 517
>Z82090-3|CAD98728.1| 1516|Caenorhabditis elegans Hypothetical
protein ZK337.1c protein.
Length = 1516
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 13 FDNFDTDLFRFVESK*RSVFALTVATRSILAMEKPWLRWTA 135
F + DL FV++K + VA ++ +++E PW RW A
Sbjct: 253 FITINDDLSVFVDAK--YTYGKGVAGKAKVSLELPWHRWHA 291
>Z82090-2|CAB05007.2| 1501|Caenorhabditis elegans Hypothetical
protein ZK337.1b protein.
Length = 1501
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 13 FDNFDTDLFRFVESK*RSVFALTVATRSILAMEKPWLRWTA 135
F + DL FV++K + VA ++ +++E PW RW A
Sbjct: 253 FITINDDLSVFVDAK--YTYGKGVAGKAKVSLELPWHRWHA 291
>Z82090-1|CAB05006.1| 1508|Caenorhabditis elegans Hypothetical
protein ZK337.1a protein.
Length = 1508
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 13 FDNFDTDLFRFVESK*RSVFALTVATRSILAMEKPWLRWTA 135
F + DL FV++K + VA ++ +++E PW RW A
Sbjct: 253 FITINDDLSVFVDAK--YTYGKGVAGKAKVSLELPWHRWHA 291
>Z46343-6|CAL36520.1| 366|Caenorhabditis elegans Hypothetical
protein T23F11.3b protein.
Length = 366
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 29 PIFFVSWSQNEDRSLRLQWLQDLSW 103
P V+W ++ DRSL LQ QD+++
Sbjct: 238 PAHLVTWLRSVDRSLLLQGWQDIAF 262
>Z46343-5|CAA86458.2| 356|Caenorhabditis elegans Hypothetical
protein T23F11.3a protein.
Length = 356
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 29 PIFFVSWSQNEDRSLRLQWLQDLSW 103
P V+W ++ DRSL LQ QD+++
Sbjct: 228 PAHLVTWLRSVDRSLLLQGWQDIAF 252
>Z77666-5|CAB01230.1| 729|Caenorhabditis elegans Hypothetical
protein K08E7.7 protein.
Length = 729
Score = 26.2 bits (55), Expect = 5.7
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = -2
Query: 179 QMDSFTFGVQECECLAVHLNQGFSMARID 93
+ D+F F + C C+ +LN+ F +++
Sbjct: 93 EWDNFKFSTRICNCIFQYLNRNFVSKKVE 121
>Z49968-1|CAA90258.2| 499|Caenorhabditis elegans Hypothetical
protein M110.1 protein.
Length = 499
Score = 26.2 bits (55), Expect = 5.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 129 PP*PGFFHGQDRSCSHCKRKDRSS 58
PP P G+ SC+HC+ D+ S
Sbjct: 254 PPGPAGSDGRKGSCAHCQSDDKLS 277
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical
protein K04H4.1b protein.
Length = 1502
Score = 26.2 bits (55), Expect = 5.7
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 42 FRGVKMKIGLCAYSGYKIYPGHGKTLVKVDG 134
F G+ IG YSG K +PG G V DG
Sbjct: 474 FPGIPGDIGDPGYSGEKGFPGTGVNKVGPDG 504
>U97407-6|AAB52481.1| 751|Caenorhabditis elegans Tyrosinase protein
4 protein.
Length = 751
Score = 25.8 bits (54), Expect = 7.5
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 270 CKKDTKVPACNCR 308
C+K+T+ ACNCR
Sbjct: 584 CRKNTRYMACNCR 596
>AF068709-3|AAC19254.1| 332|Caenorhabditis elegans Serpentine
receptor, class t protein28 protein.
Length = 332
Score = 25.8 bits (54), Expect = 7.5
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -3
Query: 271 HVSWPVLLRAPLGIYVCIERSML--LTRGFLLIKWTASHLEFKNVN 140
HV W AP+ IY+C+ R++ L R L + H+E ++N
Sbjct: 280 HVLWQFGHGAPVLIYLCLNRTLRSGLLRRLGLRRVRIGHMERGSIN 325
>Z81564-5|CAB04569.1| 656|Caenorhabditis elegans Hypothetical
protein K05C4.5 protein.
Length = 656
Score = 25.4 bits (53), Expect = 10.0
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -2
Query: 269 RFLACSSSCPFGNLRLYRTVH-VTYTGISP 183
R + C ++ P+GNL T H VT ISP
Sbjct: 340 RIITCWAASPYGNLIAIGTCHDVTIYKISP 369
>Z49913-2|CAA90143.1| 660|Caenorhabditis elegans Hypothetical
protein ZK938.3 protein.
Length = 660
Score = 25.4 bits (53), Expect = 10.0
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = +2
Query: 8 LTLTILTPIFFVSWSQNEDRSLRLQWL 88
L T+ TP +W + + + ++QWL
Sbjct: 449 LVQTVCTPCSLGTWQKQKSKDQKMQWL 475
>U40958-5|AAA81764.1| 654|Caenorhabditis elegans Hypothetical
protein F09F9.4 protein.
Length = 654
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 2 HELTLTILTPIFFVSWSQNEDRSLRLQWLQD 94
++ +L + PIF V WS++ D + RL+ + D
Sbjct: 457 YQFSLPMSAPIFVVLWSKSND-TARLKQIDD 486
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,657,344
Number of Sequences: 27780
Number of extensions: 189619
Number of successful extensions: 495
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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