Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_P15
         (367 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0UI71 Cluster: Putative uncharacterized protein; n=1; ...    31   4.9  
UniRef50_A5PH39 Cluster: HAK1 potassium transporter; n=1; Physco...    31   8.6  
UniRef50_Q9UUD1 Cluster: Sterol regulatory element binding prote...    31   8.6  

>UniRef50_Q0UI71 Cluster: Putative uncharacterized protein; n=1;
           Phaeosphaeria nodorum|Rep: Putative uncharacterized
           protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 342

 Score = 31.5 bits (68), Expect = 4.9
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 362 YAQNIWNAVGAAGTSYYSYKVNSTINLENGKNHCTK 255
           Y+   W  +G     +Y+YKVN   N+ +G N+CT+
Sbjct: 37  YSPTGWFVLGGKPNEHYTYKVN---NIRDGFNYCTR 69


>UniRef50_A5PH39 Cluster: HAK1 potassium transporter; n=1;
           Physcomitrella patens|Rep: HAK1 potassium transporter -
           Physcomitrella patens (Moss)
          Length = 822

 Score = 30.7 bits (66), Expect = 8.6
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 246 NLFFCAMIFSIFQVYGAIHFI*IVAGARGPDRVPYVLCIC 365
           N+F CA+ F++F +   I+F  +++       VP V+  C
Sbjct: 513 NIFLCALFFTVFFIIEGIYFSAVLSKVTQGGWVPLVIAAC 552


>UniRef50_Q9UUD1 Cluster: Sterol regulatory element binding protein
           Sre1; n=1; Schizosaccharomyces pombe|Rep: Sterol
           regulatory element binding protein Sre1 -
           Schizosaccharomyces pombe (Fission yeast)
          Length = 900

 Score = 30.7 bits (66), Expect = 8.6
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 186 LCRRSLFXKRTRLKHSNHSNNLFFCAMIFSIFQVYG 293
           L R+++F K   L HS  + +LFF  +IF++   YG
Sbjct: 492 LFRKTVFEKYCLLDHSTSTISLFFGLLIFTLKSAYG 527


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 359,185,638
Number of Sequences: 1657284
Number of extensions: 5837488
Number of successful extensions: 12149
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12149
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 13220924981
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)