Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_P15
         (367 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    31   0.074
SPAC823.10c |||mitochondrial carrier with solute carrier repeats...    27   0.91 
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    24   6.4  
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    24   6.4  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    24   6.4  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    24   6.4  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    24   6.4  

>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 30.7 bits (66), Expect = 0.074
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 186 LCRRSLFXKRTRLKHSNHSNNLFFCAMIFSIFQVYG 293
           L R+++F K   L HS  + +LFF  +IF++   YG
Sbjct: 492 LFRKTVFEKYCLLDHSTSTISLFFGLLIFTLKSAYG 527


>SPAC823.10c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 27.1 bits (57), Expect = 0.91
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 47  FQRFKTTADNTSIHTILLTYFYELSNSN 130
           F+ F  TA   + H  L  YFYELS  N
Sbjct: 161 FRGFGVTALRDAPHAGLYVYFYELSKQN 188


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -1

Query: 79  RVVRSGLKPLEP-FFLHREMPLGPP 8
           ++V +   P+EP  F H+++P GPP
Sbjct: 203 KMVTAEQDPMEPPKFRHKKVPRGPP 227


>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 323 TSYYSYKVNSTINLENG 273
           T+ YSY +NST+++  G
Sbjct: 155 TTNYSYTINSTLDISKG 171


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 156 GPTPKTYGKFEFDSS 112
           GP PK Y KF F +S
Sbjct: 644 GPAPKLYEKFHFTTS 658


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 63  VLNLWNLFFYIEKCL*VRPSC 1
           V  LW L F ++K +   PSC
Sbjct: 44  VSTLWRLLFELQKMIECEPSC 64


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +3

Query: 234 NHSNNLFFCAMIFSIFQVYGAIHF 305
           ++S ++FF   I+ +F+V+   HF
Sbjct: 582 DNSKSIFFLFKIYKVFEVFVVPHF 605


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,502,492
Number of Sequences: 5004
Number of extensions: 26073
Number of successful extensions: 49
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)