Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_P15
         (367 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0046 - 25398412-25398594,25399022-25399060,25399896-254003...    28   2.6  
01_01_0978 + 7738232-7740848,7740929-7741320                           27   3.4  
11_08_0009 + 27600881-27602592,27602665-27603008,27603159-276038...    27   4.5  
11_08_0024 + 27747449-27747940,27748141-27750177                       27   6.0  

>02_05_0046 - 25398412-25398594,25399022-25399060,25399896-25400360,
            25400758-25400816,25400920-25401748,25402554-25402898,
            25402973-25403435,25403537-25403640,25403692-25403901,
            25404933-25405088,25405774-25406052,25406237-25406986,
            25407141-25407232,25407977-25408361,25408672-25408752,
            25409196-25409354,25409399-25409506,25409604-25409666,
            25409764-25409835,25409932-25410366
          Length = 1758

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 44   RFQRFKTTADNTSIHTILLTYFYELSNSNFP 136
            R + F  T D T  +T+   +F+  SNS FP
Sbjct: 1229 REKNFMVTGDGTKPYTLSGKFFFNASNSPFP 1259


>01_01_0978 + 7738232-7740848,7740929-7741320
          Length = 1002

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 180 KVVKNNFIGPTPKTYGKFE 124
           K+  NNF GP P+++G+F+
Sbjct: 148 KLDSNNFSGPIPESFGRFK 166


>11_08_0009 +
           27600881-27602592,27602665-27603008,27603159-27603806,
           27603908-27604296
          Length = 1030

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 263 NDFFHFPSLWCYSLYMNSSWCPRPRPRSIC 352
           N+ F  PSLW +S+  N+   P P+  + C
Sbjct: 272 NESFRLPSLWFFSIDANNFTGPIPQGFAAC 301


>11_08_0024 + 27747449-27747940,27748141-27750177
          Length = 842

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 263 NDFFHFPSLWCYSLYMNSSWCPRPRPRSIC 352
           N+ F  PSLW +S+  N+   P P+  + C
Sbjct: 199 NESFRLPSLWFFSVDANNFTGPIPQGFAAC 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,577,009
Number of Sequences: 37544
Number of extensions: 156139
Number of successful extensions: 347
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)