Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_P14
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    67   8e-13
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    62   2e-11
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    58   4e-10
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    28   0.58 
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    25   3.1  

>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 67.3 bits (157), Expect = 8e-13
 Identities = 30/51 (58%), Positives = 44/51 (86%)
 Frame = +1

Query: 127 KASPAAADVEKILSSVGIEADSEKLKKVISELNG*NVEELIEAGRGKLSSM 279
           K SP+A+D+E +LS+VGIEA++E+++ +ISELNG N+EELI AG  KLS++
Sbjct: 15  KQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLSTV 65


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 62.5 bits (145), Expect = 2e-11
 Identities = 27/51 (52%), Positives = 44/51 (86%)
 Frame = +1

Query: 127 KASPAAADVEKILSSVGIEADSEKLKKVISELNG*NVEELIEAGRGKLSSM 279
           K SP+A+D+E +LS+VGIEA+SE+++ +I+ELNG +++ELI AG  KL+++
Sbjct: 15  KDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATV 65


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 58.4 bits (135), Expect = 4e-10
 Identities = 25/51 (49%), Positives = 43/51 (84%)
 Frame = +1

Query: 127 KASPAAADVEKILSSVGIEADSEKLKKVISELNG*NVEELIEAGRGKLSSM 279
           K SP+A+D+E +LS+VGIE++SE+++ +I EL+G +++ELI AG  KL+++
Sbjct: 15  KNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKLATV 65


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 27.9 bits (59), Expect = 0.58
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 151  VEKILSSVGIEADSEKLKKVISELNG 228
            V++I   VG+E DSE  K  + E+ G
Sbjct: 1742 VDEIFGEVGVEKDSEDYKSNVKEIKG 1767


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 154 EKILSSVGIEADSEKLKKVISELNG*NVEELI 249
           E +L S G+E  S+   KV S +N  +VEE I
Sbjct: 297 ELVLLSEGVEMYSDDWAKVASHVNTKSVEECI 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 897,928
Number of Sequences: 5004
Number of extensions: 11671
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)