Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_P14
         (385 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161     53   7e-08
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129           46   8e-06
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764...    44   4e-05
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707...    27   6.7  
02_05_1345 + 35825552-35825834,35825914-35826022,35826098-358261...    26   8.9  

>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
          Length = 113

 Score = 53.2 bits (122), Expect = 7e-08
 Identities = 24/49 (48%), Positives = 38/49 (77%)
 Frame = +1

Query: 133 SPAAADVEKILSSVGIEADSEKLKKVISELNG*NVEELIEAGRGKLSSM 279
           SP+A D++ IL SVG+EA+ E+L+ ++SEL G ++ E+I AGR K +S+
Sbjct: 17  SPSADDIKNILESVGVEANDERLEFLLSELEGKDITEVIAAGREKFASV 65


>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
          Length = 114

 Score = 46.4 bits (105), Expect = 8e-06
 Identities = 21/50 (42%), Positives = 35/50 (70%)
 Frame = +1

Query: 130 ASPAAADVEKILSSVGIEADSEKLKKVISELNG*NVEELIEAGRGKLSSM 279
           +SP A D+  IL SVG E D+ K++ ++S+++G ++ ELI  GR K +S+
Sbjct: 16  SSPTAEDLTTILESVGCEIDNAKMELLLSQVSGKDITELIACGREKFASV 65


>02_04_0074 -
           19474786-19474812,19475174-19475400,19476362-19476496,
           19478662-19479193
          Length = 306

 Score = 44.0 bits (99), Expect = 4e-05
 Identities = 20/49 (40%), Positives = 34/49 (69%)
 Frame = +1

Query: 133 SPAAADVEKILSSVGIEADSEKLKKVISELNG*NVEELIEAGRGKLSSM 279
           +P+A D+  IL SVG E D  K++ ++S+L G ++ E+I +GR K +S+
Sbjct: 210 NPSAEDLTTILESVGAEVDHGKMELLLSQLAGKDITEIIASGREKFASV 258


>07_03_0809 -
           21669632-21669637,21669871-21670131,21670573-21670752,
           21671458-21672819
          Length = 602

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 133 SPAAADVEKILSSVGIEADSEKLKKVISELNG 228
           SPA  D+   L+  G E DS   + ++S+LNG
Sbjct: 50  SPATQDLLSKLNGSGGEGDSPATQDLLSKLNG 81


>02_05_1345 +
           35825552-35825834,35825914-35826022,35826098-35826137,
           35827481-35827522,35827605-35827694,35828400-35828470,
           35829375-35829463,35829583-35829652,35829898-35830048,
           35830146-35830235,35830549-35830647
          Length = 377

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 26  PXGXPXXXYTFRVLAT*KMRYVAVLLPXPXXWAAKRPQLLLMSKR 160
           P   P    TFR LAT  MR +A+L+     ++A    + L++ R
Sbjct: 49  PSLAPTGAITFRWLATRPMRRLALLIALNVAYSATELAIGLLTAR 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,276,716
Number of Sequences: 37544
Number of extensions: 88518
Number of successful extensions: 136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)