Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_P14
         (385 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    47   4e-06
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    45   2e-05
Z75712-1|CAB00040.1|  724|Caenorhabditis elegans Hypothetical pr...    26   7.9  

>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 47.2 bits (107), Expect = 4e-06
 Identities = 24/50 (48%), Positives = 33/50 (66%)
 Frame = +1

Query: 130 ASPAAADVEKILSSVGIEADSEKLKKVISELNG*NVEELIEAGRGKLSSM 279
           A+P   D++ ILS+VG++AD+E  K V+S L G  VEELI  G   L S+
Sbjct: 16  ANPKVDDLKNILSAVGVDADAETAKLVVSRLAGKTVEELIAEGSAGLVSV 65


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 21/50 (42%), Positives = 31/50 (62%)
 Frame = +1

Query: 130 ASPAAADVEKILSSVGIEADSEKLKKVISELNG*NVEELIEAGRGKLSSM 279
           ASP+A DV K+L + G++ D E    V+  L G  + E+I  G+ KLSS+
Sbjct: 16  ASPSAQDVLKVLEAGGLDCDMENANSVVDALKGKTISEVIAQGKVKLSSV 65


>Z75712-1|CAB00040.1|  724|Caenorhabditis elegans Hypothetical
           protein K04G2.3 protein.
          Length = 724

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 151 VEKILSSVGIEADSEKLKKVISELNG*NVEELIEAGRGKLSSM 279
           +E  +S++GI+ D ++  KV+S   G  ++ L  +  G  S +
Sbjct: 195 IESKMSAMGIDDDKKRNSKVVSTAVGYKIQILNASAEGSTSDV 237


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,030,316
Number of Sequences: 27780
Number of extensions: 67006
Number of successful extensions: 138
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)