Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_P13
         (363 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   114   3e-27
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   114   5e-27
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    25   2.7  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    25   4.8  
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    25   4.8  
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    24   6.3  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  114 bits (275), Expect = 3e-27
 Identities = 51/95 (53%), Positives = 69/95 (72%)
 Frame = +1

Query: 79  LLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXX 258
           +L  +++D+  +LAA +H+G++N+  +ME YV+KRR DG H+INL +TWEK         
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 259 XXEDPADVFVISSRAFGQRAVLKYAAHTGATPIAG 363
             E+PADV VISSR +G RAVLK+AAHTGAT IAG
Sbjct: 70  TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAG 104


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  114 bits (274), Expect = 5e-27
 Identities = 49/99 (49%), Positives = 71/99 (71%)
 Frame = +1

Query: 67  GGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXX 246
           G  ++L  ++ED+ ++LAA  H+G++N+  +M+ YV+KRR DG H++NL +TWEK     
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 247 XXXXXXEDPADVFVISSRAFGQRAVLKYAAHTGATPIAG 363
                 E+PADV V+S+R +G RAVLK+AAHTGAT IAG
Sbjct: 65  RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAG 103


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 228 FPCTPKINYVSTVTTAFIN 172
           F C  K++YVS  TT F++
Sbjct: 38  FTCIDKLSYVSNYTTVFLS 56


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 258 DNSTSSEYKLFPCTPKINYVSTVT 187
           DNS SS    FP +PK++  +TV+
Sbjct: 154 DNSISSNSDNFPPSPKVDTSNTVS 177


>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 52  NATMSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGD-GTHVIN 210
           N+T+SG  D  +++   +        +L A+N N Q E      R + G H+++
Sbjct: 204 NSTVSGSEDSASITTPSLRMREDVVAYLRADNKNLQYEPKSRSMRDETGYHMVD 257


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 359 AIGVAPVCAAYLSTARW 309
           A+GVAP  A Y + ARW
Sbjct: 40  AVGVAPDTAKYPNGARW 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,414,257
Number of Sequences: 5004
Number of extensions: 25347
Number of successful extensions: 54
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)