Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_P13
(363 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 111 2e-25
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 108 1e-24
04_04_1701 + 35470535-35471170,35471254-35471403,35471745-354720... 28 2.6
10_08_0127 - 15010125-15011068,15011328-15011835 27 6.0
10_08_0116 + 14935582-14936089,14936850-14937188,14937914-149379... 27 6.0
04_04_0157 + 23165638-23166633 27 6.0
10_08_0041 - 14374684-14377339,14377371-14378233 26 7.9
10_08_0038 - 14336633-14336864,14336970-14337187,14337302-14339020 26 7.9
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334... 26 7.9
02_02_0625 - 12339623-12339707,12339938-12340062,12340844-123409... 26 7.9
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 111 bits (267), Expect = 2e-25
Identities = 53/103 (51%), Positives = 67/103 (65%)
Frame = +1
Query: 55 ATMSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKX 234
A G L+ +E+DV MLAA HLG +N +FQME YVYKRR DG ++INL +TWEK
Sbjct: 3 AVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWEKL 62
Query: 235 XXXXXXXXXXEDPADVFVISSRAFGQRAVLKYAAHTGATPIAG 363
E+P D+ V S+R +GQRAVLK+A +TGA IAG
Sbjct: 63 QLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAG 105
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 108 bits (260), Expect = 1e-24
Identities = 54/101 (53%), Positives = 67/101 (66%), Gaps = 2/101 (1%)
Frame = +1
Query: 67 GGLDLLALS--EEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXX 240
GG ALS E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEK
Sbjct: 5 GGAAARALSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQL 64
Query: 241 XXXXXXXXEDPADVFVISSRAFGQRAVLKYAAHTGATPIAG 363
E+P D+ V S+R +GQRAVLK+A +TGA IAG
Sbjct: 65 AARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAG 105
>04_04_1701 +
35470535-35471170,35471254-35471403,35471745-35472015,
35472152-35472262,35472476-35472650,35472748-35473020,
35473251-35473494,35473623-35473708,35473752-35473968
Length = 720
Score = 27.9 bits (59), Expect = 2.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 362 PAIGVAPVCAAYLSTARWPNARDEI 288
P + P+ Y + RWPN+RD+I
Sbjct: 189 PPTCLVPLPKGYTNPIRWPNSRDQI 213
>10_08_0127 - 15010125-15011068,15011328-15011835
Length = 483
Score = 26.6 bits (56), Expect = 6.0
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +3
Query: 3 TRRLPVALYAFSRNSYKRNDVGRIRLACAQRGRCD*DACGDHPFGSGK 146
TRR V L A +R + +VG++ + A RGR A GD G+GK
Sbjct: 92 TRRAGVGLVA-ARRDERSCEVGKVEVEVATRGRD--GAGGDGGGGAGK 136
>10_08_0116 +
14935582-14936089,14936850-14937188,14937914-14937960,
14938175-14938264
Length = 327
Score = 26.6 bits (56), Expect = 6.0
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +3
Query: 3 TRRLPVALYAFSRNSYKRNDVGRIRLACAQRGRCD*DACGDHPFGSGK 146
TRR V L A +R + +VG++ + A RGR A GD G+GK
Sbjct: 92 TRRAGVGLVA-ARRDERSCEVGKVEVEVATRGRD--GAGGDGGGGAGK 136
>04_04_0157 + 23165638-23166633
Length = 331
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 230 FSHVRRRLIT*VPSPRRL 177
FSH+RRRL+ +P+P L
Sbjct: 5 FSHLRRRLLAAIPNPNLL 22
>10_08_0041 - 14374684-14377339,14377371-14378233
Length = 1172
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 343 QCAQHI*AQHAGQMHVMR*QTHQLDPPRRQQHE 245
+CA+HI H G ++V++ H+LD R+ E
Sbjct: 918 KCARHI-DNHTGSIYVVKMLPHKLDEEARRIEE 949
>10_08_0038 - 14336633-14336864,14336970-14337187,14337302-14339020
Length = 722
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 343 QCAQHI*AQHAGQMHVMR*QTHQLDPPRRQQHE 245
+CA+HI H G ++V++ H+LD R+ E
Sbjct: 541 KCARHI-DDHTGSIYVVKMLPHKLDEEARRIEE 572
>09_04_0594 -
18831011-18831360,18831562-18832111,18832364-18833406,
18833496-18833760,18835194-18835340,18835431-18835511,
18835626-18835804,18835935-18836093,18836269-18836398,
18836935-18837094,18837337-18837419,18837865-18837915,
18838035-18838151,18838273-18838359
Length = 1133
Score = 26.2 bits (55), Expect = 7.9
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +1
Query: 22 HYTRLVVTLTNATMSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETY 171
HY + VT +G + L+ L +ED+ K L+A H E + MET+
Sbjct: 252 HYIKSQVTAA----TGAIALMQL-QEDLKKHLSAECHYTEEELEAYMETH 296
>02_02_0625 -
12339623-12339707,12339938-12340062,12340844-12340996,
12342037-12342102,12343374-12343443,12343523-12343593,
12343664-12343795,12344042-12344130,12344189-12344270,
12344743-12344811,12345641-12345730,12345856-12345918,
12346158-12346217
Length = 384
Score = 26.2 bits (55), Expect = 7.9
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -1
Query: 162 HLEINIFRSQMGGRRKHLSHIFLAER 85
HL ++ ++GG +HL H+F + R
Sbjct: 47 HLRSDVGCGEIGGNNRHLDHLFDSSR 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,194,974
Number of Sequences: 37544
Number of extensions: 195911
Number of successful extensions: 371
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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