Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_P13
         (363 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical pr...   124   3e-29
AC024810-18|ABC71796.1|  787|Caenorhabditis elegans Abnormal cel...    29   1.3  
AB212859-1|BAE66674.1|  787|Caenorhabditis elegans COGC-1 protein.     29   1.3  
U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical pr...    28   2.3  
Z35599-2|CAD91629.2|  584|Caenorhabditis elegans Hypothetical pr...    27   4.0  
Z35599-1|CAA84659.2|  581|Caenorhabditis elegans Hypothetical pr...    27   4.0  
Z70269-2|CAA94224.1|  143|Caenorhabditis elegans Hypothetical pr...    26   7.0  
AC006712-7|AAK39318.2|  264|Caenorhabditis elegans Hypothetical ...    26   9.3  

>Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical
           protein B0393.1 protein.
          Length = 276

 Score =  124 bits (298), Expect = 3e-29
 Identities = 57/101 (56%), Positives = 73/101 (72%)
 Frame = +1

Query: 61  MSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXX 240
           MSGG    AL+EEDV K+LA   HLG+ N+NFQM+ YVYKRR DG ++IN+++TWEK   
Sbjct: 1   MSGGAAHSALTEEDVMKLLATQAHLGSTNLNFQMQQYVYKRRFDGPNIINVKKTWEKLLL 60

Query: 241 XXXXXXXXEDPADVFVISSRAFGQRAVLKYAAHTGATPIAG 363
                   E+PADV V+S+R + QRA+LK+AAHTGAT I G
Sbjct: 61  AARAIAAVENPADVVVVSARPYAQRALLKFAAHTGATAIFG 101


>AC024810-18|ABC71796.1|  787|Caenorhabditis elegans Abnormal cell
           migration protein 30 protein.
          Length = 787

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 31  RLVVTLTNATMSGGLDLLALSEED-VTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVI 207
           R+V T +         LL +S  D  T  LAA   L  ++++  +E Y+ KR    TH+I
Sbjct: 144 RIVATRSELEFQNCSTLLDISRSDWATNQLAAIALLQGKDISQLLELYLEKRFEHVTHLI 203


>AB212859-1|BAE66674.1|  787|Caenorhabditis elegans COGC-1 protein.
          Length = 787

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 31  RLVVTLTNATMSGGLDLLALSEED-VTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVI 207
           R+V T +         LL +S  D  T  LAA   L  ++++  +E Y+ KR    TH+I
Sbjct: 144 RIVATRSELEFQNCSTLLDISRSDWATNQLAAIALLQGKDISQLLELYLEKRFEHVTHLI 203


>U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical protein
            M03A8.2 protein.
          Length = 2275

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 220  YAED*LREYRHHGVYKRTSPSGN*HFPLPNGWSPQA 113
            +A+D    Y HH V ++ SPS N +     G+SP A
Sbjct: 1838 WADDHDLTYTHHDVVRQESPSFNCNISPIKGYSPPA 1873


>Z35599-2|CAD91629.2|  584|Caenorhabditis elegans Hypothetical
           protein F25F2.1b protein.
          Length = 584

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 125 PPIWERKMLISRWRRTFINAVVTVLT 202
           PP + RK+L + WR  +++  VT+ T
Sbjct: 100 PPNFARKVLEAEWREMYVDPKVTIET 125


>Z35599-1|CAA84659.2|  581|Caenorhabditis elegans Hypothetical
           protein F25F2.1a protein.
          Length = 581

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 125 PPIWERKMLISRWRRTFINAVVTVLT 202
           PP + RK+L + WR  +++  VT+ T
Sbjct: 100 PPNFARKVLEAEWREMYVDPKVTIET 125


>Z70269-2|CAA94224.1|  143|Caenorhabditis elegans Hypothetical
           protein ZK1086.2 protein.
          Length = 143

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +2

Query: 125 PPIWERKMLISRWRRTFINAVVTVLT*LIFGVHGKSLYSLLVLLS 259
           PPIWER   +    R FI  V T L    + +   +LY+  VLL+
Sbjct: 13  PPIWERNAEMFEDARNFIEYVSTYLAKDFYKL---TLYAYTVLLA 54


>AC006712-7|AAK39318.2|  264|Caenorhabditis elegans Hypothetical
           protein Y119C1B.9 protein.
          Length = 264

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 13/55 (23%), Positives = 26/55 (47%)
 Frame = -1

Query: 279 ISWILHGDNSTSSEYKLFPCTPKINYVSTVTTAFINVRLHLEINIFRSQMGGRRK 115
           I W+    +S +++++ FPC  K  + +      I V  + E+ +   +M G  K
Sbjct: 74  IQWMFRPSDSVNAQWREFPCAKKEEHKNCQKEEII-VESNCEVRMNSLKMSGTYK 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,038,482
Number of Sequences: 27780
Number of extensions: 150851
Number of successful extensions: 332
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)