Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_P12
         (293 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo...    26   1.3  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    25   1.8  
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   4.0  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    24   4.0  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    23   7.1  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    23   9.3  

>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
           es pombe|chr 2|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 182 EDSDNLWWDAF 214
           ED+  LWWDAF
Sbjct: 346 EDTSKLWWDAF 356


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 140 YRVYELNKRLQQRTEDSDNLWWDAFATEFF 229
           Y  ++L KRL  R +  D L +   + EFF
Sbjct: 452 YSAHDLKKRLMIRFDGEDGLDYGGLSREFF 481


>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 215

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 173 QRTEDSDNLWWDAFATEFFEDDATL 247
           QR +  DNL  D F   F  DD+ L
Sbjct: 124 QRNDGDDNLESDKFVDPFIGDDSDL 148


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 12/55 (21%), Positives = 26/55 (47%)
 Frame = -2

Query: 259 EGES*RGVVLEELRRECVXXXXXXIFCXXXXXLVEFVNSVVWLAEIWRVPPVNRG 95
           E E    ++ EELR + +      +F        + +++++ +  IW +P  +RG
Sbjct: 582 EAEDSGALMEEELRGKFINLRCKYLFSKLTTLHEKEIDTLLTIPNIWDIPEYSRG 636


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1347

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +2

Query: 143  RVYELNK-RLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLEDG 274
            R YEL   R    +++S  LW D+     FED    T    LE G
Sbjct: 958  RNYELKVLREYLFSQESSQLWDDSPYRSIFEDRRCSTSAVILESG 1002


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 182 EDSDNLWWDAFAT 220
           E +DN+ WD FAT
Sbjct: 139 ESTDNVEWDQFAT 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 788,502
Number of Sequences: 5004
Number of extensions: 10487
Number of successful extensions: 21
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)