Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_P12
         (293 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457           28   1.5  
03_05_1094 - 30348366-30348467,30348571-30348753,30348833-303489...    26   4.6  
02_04_0233 - 21135743-21135867,21135970-21136340,21136486-211367...    26   4.6  

>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
          Length = 438

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +2

Query: 131 QPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTF 259
           Q   R++ + +R+   TED D++ WD  A   +   +   L F
Sbjct: 223 QQSVRLWTMIRRMNPLTEDQDSIHWDLTANGQYSAKSAYRLQF 265


>03_05_1094 - 30348366-30348467,30348571-30348753,30348833-30348934,
            30349617-30349967,30350049-30350276,30350353-30350509,
            30351189-30351370,30351443-30351866,30351949-30352892,
            30353509-30353773,30354558-30355120
          Length = 1166

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +2

Query: 119  PYFGQPDYRVYELNKRLQQR---TEDSDNLW 202
            PY G PD  +Y+L  R +QR   T++ +  W
Sbjct: 1058 PYQGLPDSEIYDLIMRKKQRPRLTQELEAFW 1088


>02_04_0233 -
           21135743-21135867,21135970-21136340,21136486-21136757,
           21137289-21137397,21137846-21138247,21138376-21138419,
           21138539-21138759,21140163-21140274,21140620-21140754
          Length = 596

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 128 GQPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFE 232
           G PDY  ++  KR+Q+     DN+  +  +T+  E
Sbjct: 361 GHPDYMAFKPEKRVQEPVVQHDNVVAEGSSTKQLE 395


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,382,330
Number of Sequences: 37544
Number of extensions: 72361
Number of successful extensions: 186
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)