Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_P12
(293 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC034019-1|AAH34019.1| 373|Homo sapiens LIM domain binding 2 pr... 127 7e-30
AF068651-1|AAC77817.1| 373|Homo sapiens LIM-domain binding fact... 127 7e-30
AF064493-1|AAC28343.1| 331|Homo sapiens LIM homeobox protein co... 127 7e-30
AF064492-1|AAC28342.1| 373|Homo sapiens LIM homeobox protein co... 127 7e-30
AF047337-1|AAC83552.1| 373|Homo sapiens LIM homeobox protein co... 127 7e-30
AF052389-1|AAC13274.1| 347|Homo sapiens LIM domain binding prot... 115 2e-26
BT007054-1|AAP35703.1| 375|Homo sapiens LIM domain binding 1 pr... 112 2e-25
BC009246-1|AAH09246.1| 375|Homo sapiens LIM domain binding 1 pr... 112 2e-25
BC000482-1|AAH00482.1| 375|Homo sapiens LIM domain binding 1 pr... 112 2e-25
AL500527-4|CAH72217.1| 375|Homo sapiens LIM domain binding 1 pr... 112 2e-25
AJ243098-1|CAB45409.1| 402|Homo sapiens Nuclear LIM interactor ... 112 2e-25
AF068652-1|AAC77818.1| 375|Homo sapiens LIM-domain binding fact... 112 2e-25
AF064491-1|AAC28341.1| 375|Homo sapiens LIM homeobox protein co... 112 2e-25
AB250384-1|BAE95402.1| 316|Homo sapiens LIM-domain-binding prot... 112 2e-25
AB016485-1|BAA31991.1| 375|Homo sapiens LIM homeobox protein co... 112 2e-25
AC106894-1|AAY40912.1| 44|Homo sapiens unknown protein. 49 2e-06
AB032983-1|BAA86471.1| 428|Homo sapiens KIAA1157 protein protein. 30 1.2
BC078154-1|AAH78154.1| 595|Homo sapiens zinc finger protein 317... 29 2.7
AF307097-1|AAL29191.1| 510|Homo sapiens ZNF317-4 protein protein. 29 2.7
AF307096-1|AAL29190.1| 478|Homo sapiens ZNF317-3 protein protein. 29 2.7
AF275255-1|AAL29188.1| 595|Homo sapiens ZNF317-2 protein protein. 29 2.7
AF148135-1|AAL29182.1| 563|Homo sapiens ZNF317-1 protein protein. 29 2.7
AB046808-1|BAB13414.1| 613|Homo sapiens KIAA1588 protein protein. 29 2.7
>BC034019-1|AAH34019.1| 373|Homo sapiens LIM domain binding 2
protein.
Length = 373
Score = 127 bits (306), Expect = 7e-30
Identities = 53/62 (85%), Positives = 57/62 (91%)
Frame = +2
Query: 107 RRHAPYFGQPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLEDGPNRY 286
RRH PY QP+YR+YE+NKRLQ RTEDSDNLWWDAFATEFFEDDATLTL+FCLEDGP RY
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRY 78
Query: 287 TI 292
TI
Sbjct: 79 TI 80
>AF068651-1|AAC77817.1| 373|Homo sapiens LIM-domain binding factor
CLIM1 protein.
Length = 373
Score = 127 bits (306), Expect = 7e-30
Identities = 53/62 (85%), Positives = 57/62 (91%)
Frame = +2
Query: 107 RRHAPYFGQPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLEDGPNRY 286
RRH PY QP+YR+YE+NKRLQ RTEDSDNLWWDAFATEFFEDDATLTL+FCLEDGP RY
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRY 78
Query: 287 TI 292
TI
Sbjct: 79 TI 80
>AF064493-1|AAC28343.1| 331|Homo sapiens LIM homeobox protein
cofactor protein.
Length = 331
Score = 127 bits (306), Expect = 7e-30
Identities = 53/62 (85%), Positives = 57/62 (91%)
Frame = +2
Query: 107 RRHAPYFGQPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLEDGPNRY 286
RRH PY QP+YR+YE+NKRLQ RTEDSDNLWWDAFATEFFEDDATLTL+FCLEDGP RY
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRY 78
Query: 287 TI 292
TI
Sbjct: 79 TI 80
>AF064492-1|AAC28342.1| 373|Homo sapiens LIM homeobox protein
cofactor protein.
Length = 373
Score = 127 bits (306), Expect = 7e-30
Identities = 53/62 (85%), Positives = 57/62 (91%)
Frame = +2
Query: 107 RRHAPYFGQPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLEDGPNRY 286
RRH PY QP+YR+YE+NKRLQ RTEDSDNLWWDAFATEFFEDDATLTL+FCLEDGP RY
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRY 78
Query: 287 TI 292
TI
Sbjct: 79 TI 80
>AF047337-1|AAC83552.1| 373|Homo sapiens LIM homeobox protein
cofactor protein.
Length = 373
Score = 127 bits (306), Expect = 7e-30
Identities = 53/62 (85%), Positives = 57/62 (91%)
Frame = +2
Query: 107 RRHAPYFGQPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLEDGPNRY 286
RRH PY QP+YR+YE+NKRLQ RTEDSDNLWWDAFATEFFEDDATLTL+FCLEDGP RY
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRY 78
Query: 287 TI 292
TI
Sbjct: 79 TI 80
>AF052389-1|AAC13274.1| 347|Homo sapiens LIM domain binding protein
protein.
Length = 347
Score = 115 bits (277), Expect = 2e-26
Identities = 48/54 (88%), Positives = 52/54 (96%)
Frame = +2
Query: 131 QPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLEDGPNRYTI 292
QP+YR+YE+NKRLQ RTEDSDNLWWDAFATEFFEDDATLTL+FCLEDGP RYTI
Sbjct: 3 QPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTI 56
>BT007054-1|AAP35703.1| 375|Homo sapiens LIM domain binding 1
protein.
Length = 375
Score = 112 bits (270), Expect = 2e-25
Identities = 47/61 (77%), Positives = 51/61 (83%)
Frame = +2
Query: 110 RHAPYFGQPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLEDGPNRYT 289
RH PY Q DYR++ELNKRLQ TE+ DNLWWDAF TEFFEDDA LT+TFCLEDGP RYT
Sbjct: 23 RHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYT 82
Query: 290 I 292
I
Sbjct: 83 I 83
>BC009246-1|AAH09246.1| 375|Homo sapiens LIM domain binding 1
protein.
Length = 375
Score = 112 bits (270), Expect = 2e-25
Identities = 47/61 (77%), Positives = 51/61 (83%)
Frame = +2
Query: 110 RHAPYFGQPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLEDGPNRYT 289
RH PY Q DYR++ELNKRLQ TE+ DNLWWDAF TEFFEDDA LT+TFCLEDGP RYT
Sbjct: 23 RHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYT 82
Query: 290 I 292
I
Sbjct: 83 I 83
>BC000482-1|AAH00482.1| 375|Homo sapiens LIM domain binding 1
protein.
Length = 375
Score = 112 bits (270), Expect = 2e-25
Identities = 47/61 (77%), Positives = 51/61 (83%)
Frame = +2
Query: 110 RHAPYFGQPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLEDGPNRYT 289
RH PY Q DYR++ELNKRLQ TE+ DNLWWDAF TEFFEDDA LT+TFCLEDGP RYT
Sbjct: 23 RHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYT 82
Query: 290 I 292
I
Sbjct: 83 I 83
>AL500527-4|CAH72217.1| 375|Homo sapiens LIM domain binding 1
protein.
Length = 375
Score = 112 bits (270), Expect = 2e-25
Identities = 47/61 (77%), Positives = 51/61 (83%)
Frame = +2
Query: 110 RHAPYFGQPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLEDGPNRYT 289
RH PY Q DYR++ELNKRLQ TE+ DNLWWDAF TEFFEDDA LT+TFCLEDGP RYT
Sbjct: 23 RHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYT 82
Query: 290 I 292
I
Sbjct: 83 I 83
>AJ243098-1|CAB45409.1| 402|Homo sapiens Nuclear LIM interactor
protein.
Length = 402
Score = 112 bits (270), Expect = 2e-25
Identities = 47/61 (77%), Positives = 51/61 (83%)
Frame = +2
Query: 110 RHAPYFGQPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLEDGPNRYT 289
RH PY Q DYR++ELNKRLQ TE+ DNLWWDAF TEFFEDDA LT+TFCLEDGP RYT
Sbjct: 50 RHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYT 109
Query: 290 I 292
I
Sbjct: 110 I 110
>AF068652-1|AAC77818.1| 375|Homo sapiens LIM-domain binding factor
CLIM2 protein.
Length = 375
Score = 112 bits (270), Expect = 2e-25
Identities = 47/61 (77%), Positives = 51/61 (83%)
Frame = +2
Query: 110 RHAPYFGQPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLEDGPNRYT 289
RH PY Q DYR++ELNKRLQ TE+ DNLWWDAF TEFFEDDA LT+TFCLEDGP RYT
Sbjct: 23 RHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYT 82
Query: 290 I 292
I
Sbjct: 83 I 83
>AF064491-1|AAC28341.1| 375|Homo sapiens LIM homeobox protein
cofactor protein.
Length = 375
Score = 112 bits (270), Expect = 2e-25
Identities = 47/61 (77%), Positives = 51/61 (83%)
Frame = +2
Query: 110 RHAPYFGQPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLEDGPNRYT 289
RH PY Q DYR++ELNKRLQ TE+ DNLWWDAF TEFFEDDA LT+TFCLEDGP RYT
Sbjct: 23 RHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYT 82
Query: 290 I 292
I
Sbjct: 83 I 83
>AB250384-1|BAE95402.1| 316|Homo sapiens LIM-domain-binding protein
1b protein.
Length = 316
Score = 112 bits (270), Expect = 2e-25
Identities = 47/61 (77%), Positives = 51/61 (83%)
Frame = +2
Query: 110 RHAPYFGQPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLEDGPNRYT 289
RH PY Q DYR++ELNKRLQ TE+ DNLWWDAF TEFFEDDA LT+TFCLEDGP RYT
Sbjct: 23 RHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYT 82
Query: 290 I 292
I
Sbjct: 83 I 83
>AB016485-1|BAA31991.1| 375|Homo sapiens LIM homeobox protein
cofactor (CLIM-2) protein.
Length = 375
Score = 112 bits (270), Expect = 2e-25
Identities = 47/61 (77%), Positives = 51/61 (83%)
Frame = +2
Query: 110 RHAPYFGQPDYRVYELNKRLQQRTEDSDNLWWDAFATEFFEDDATLTLTFCLEDGPNRYT 289
RH PY Q DYR++ELNKRLQ TE+ DNLWWDAF TEFFEDDA LT+TFCLEDGP RYT
Sbjct: 23 RHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYT 82
Query: 290 I 292
I
Sbjct: 83 I 83
>AC106894-1|AAY40912.1| 44|Homo sapiens unknown protein.
Length = 44
Score = 49.2 bits (112), Expect = 2e-06
Identities = 19/26 (73%), Positives = 22/26 (84%)
Frame = +2
Query: 107 RRHAPYFGQPDYRVYELNKRLQQRTE 184
RRH PY QP+YR+YE+NKRLQ RTE
Sbjct: 19 RRHTPYMVQPEYRIYEMNKRLQSRTE 44
>AB032983-1|BAA86471.1| 428|Homo sapiens KIAA1157 protein protein.
Length = 428
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +2
Query: 134 PDYRVYELNKRLQQRTED-----SDNLWWDAFATEFFEDDATLTLTFCLEDGPNRYTI 292
P+ R+Y+L+K ++D +D LW D + E + T L C D P+RYT+
Sbjct: 328 PEVRIYDLSK-YDHGSDDVLILATDGLW-DVLSNEEVAEAITQFLPNCDPDDPHRYTL 383
>BC078154-1|AAH78154.1| 595|Homo sapiens zinc finger protein 317
protein.
Length = 595
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +1
Query: 145 SLRTQQAVTTKDRRFR*SMVGRIRDGVLRGRRHVNSHLLFRR 270
+L + + T++RR+ + G++ L RRH++ HL+ +R
Sbjct: 460 NLTAHRKIHTQERRYECAACGKVFGDYLSRRRHMSVHLVKKR 501
>AF307097-1|AAL29191.1| 510|Homo sapiens ZNF317-4 protein protein.
Length = 510
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +1
Query: 145 SLRTQQAVTTKDRRFR*SMVGRIRDGVLRGRRHVNSHLLFRR 270
+L + + T++RR+ + G++ L RRH++ HL+ +R
Sbjct: 375 NLTAHRKIHTQERRYECAACGKVFGDYLSRRRHMSVHLVKKR 416
>AF307096-1|AAL29190.1| 478|Homo sapiens ZNF317-3 protein protein.
Length = 478
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +1
Query: 145 SLRTQQAVTTKDRRFR*SMVGRIRDGVLRGRRHVNSHLLFRR 270
+L + + T++RR+ + G++ L RRH++ HL+ +R
Sbjct: 343 NLTAHRKIHTQERRYECAACGKVFGDYLSRRRHMSVHLVKKR 384
>AF275255-1|AAL29188.1| 595|Homo sapiens ZNF317-2 protein protein.
Length = 595
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +1
Query: 145 SLRTQQAVTTKDRRFR*SMVGRIRDGVLRGRRHVNSHLLFRR 270
+L + + T++RR+ + G++ L RRH++ HL+ +R
Sbjct: 460 NLTAHRKIHTQERRYECAACGKVFGDYLSRRRHMSVHLVKKR 501
>AF148135-1|AAL29182.1| 563|Homo sapiens ZNF317-1 protein protein.
Length = 563
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +1
Query: 145 SLRTQQAVTTKDRRFR*SMVGRIRDGVLRGRRHVNSHLLFRR 270
+L + + T++RR+ + G++ L RRH++ HL+ +R
Sbjct: 428 NLTAHRKIHTQERRYECAACGKVFGDYLSRRRHMSVHLVKKR 469
>AB046808-1|BAB13414.1| 613|Homo sapiens KIAA1588 protein protein.
Length = 613
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +1
Query: 145 SLRTQQAVTTKDRRFR*SMVGRIRDGVLRGRRHVNSHLLFRR 270
+L + + T++RR+ + G++ L RRH++ HL+ +R
Sbjct: 478 NLTAHRKIHTQERRYECAACGKVFGDYLSRRRHMSVHLVKKR 519
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,826,052
Number of Sequences: 237096
Number of extensions: 365637
Number of successful extensions: 739
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 76,859,062
effective HSP length: 74
effective length of database: 59,313,958
effective search space used: 1364221034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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