Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_P11
(279 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 24 3.5
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc... 24 4.6
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 24 4.6
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 23 6.1
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 23 6.1
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 23 6.1
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ... 23 8.0
SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces pombe... 23 8.0
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 23 8.0
SPBC146.11c |mug97|meu33|meiotically upregulated gene Mug97|Schi... 23 8.0
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 23 8.0
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 24.2 bits (50), Expect = 3.5
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1
Query: 169 KFKKERAQKYLNLDLPDPNEDVTNMTA 249
K+K A + ++L + D ++D+T+ TA
Sbjct: 889 KYKGNLASQMMSLGIEDESDDLTHFTA 915
>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 442
Score = 23.8 bits (49), Expect = 4.6
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +1
Query: 85 SKFVSLRLTPVLICHQQSRNTTSKHYN--PKFKKERAQKYLNLDLPDPNEDVTNMTAEKI 258
++F + P L + +R YN F R+ +YL+ D+PD E N ++
Sbjct: 195 ARFSKKQPVPSLGTIESTRAEVDNFYNFWYNFDSWRSFEYLDKDIPDDGESRDNKRFQEK 254
Query: 259 RQKMKEK 279
+ + + +
Sbjct: 255 KNRSERQ 261
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 23.8 bits (49), Expect = 4.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 149 VVLRDCWWHISTGVRRRDTNFES 81
V L+ +WH+S+G T FE+
Sbjct: 489 VKLKHKYWHLSSGFHLHITRFEA 511
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 23.4 bits (48), Expect = 6.1
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -1
Query: 204 IEVFLCPLLLK 172
+ VFLCP+LLK
Sbjct: 29 VSVFLCPILLK 39
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 23.4 bits (48), Expect = 6.1
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +1
Query: 130 QQSRNTTSKHYNPKFKKERAQKYLNLDLPDPNEDVTNMTAEKIRQKMK 273
Q S N+TS + K E + K + L +ED + T+ K + K
Sbjct: 332 QSSTNSTSSEESTSVKDEDSSKIHDKSLKRKHEDDESSTSTKSSRTTK 379
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 23.4 bits (48), Expect = 6.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 196 YLNLDLPDPNEDVTN 240
Y LDLP P+E +TN
Sbjct: 465 YQKLDLPLPHEHITN 479
>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 23.0 bits (47), Expect = 8.0
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 102 SPNPSADMPPTISQ 143
SPN SA +PP +S+
Sbjct: 117 SPNGSASLPPPVSE 130
>SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 295
Score = 23.0 bits (47), Expect = 8.0
Identities = 8/22 (36%), Positives = 10/22 (45%)
Frame = -2
Query: 140 RDCWWHISTGVRRRDTNFESTV 75
R CWW ST + F + V
Sbjct: 253 RKCWWDSSTSITYNGIEFATWV 274
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 23.0 bits (47), Expect = 8.0
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 121 ICHQQSRNTTSKHYNPKFKKERAQKYLNLDLPDPNEDVTNMTAE 252
I QQ +++ K NP E N P+P+E TN AE
Sbjct: 467 IVKQQKKSSALKIVNPVTHTEVVVPQKNASSPNPSE--TNSRAE 508
>SPBC146.11c |mug97|meu33|meiotically upregulated gene
Mug97|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 23.0 bits (47), Expect = 8.0
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -2
Query: 230 SSFGSGRSKLRYFCALSFLNFGL*CFEVVLRDCWWH 123
+ + S ++ F L ++FG C V+ R WW+
Sbjct: 197 AKYFSSENRPSIFYVLQGISFGPECEYVLRRKHWWN 232
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 23.0 bits (47), Expect = 8.0
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -2
Query: 242 ILVTSSFGSGRSKLRYFCALSFLNFGL*CFEVVL 141
I++ GSG+S++ + LN G+ C V+
Sbjct: 2170 IILLGKTGSGKSQIFRILQSALLNIGIDCIVYVI 2203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,218,668
Number of Sequences: 5004
Number of extensions: 24449
Number of successful extensions: 78
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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