Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_P11
(279 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0234 - 26602660-26602728,26602814-26602988,26603077-266031... 28 0.93
07_03_0223 - 15368631-15368682,15368765-15368838,15369312-153693... 26 4.9
06_03_1501 + 30612643-30613310,30613396-30613501,30613732-306139... 26 4.9
06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255... 26 4.9
01_06_1614 - 38648495-38649706 26 4.9
07_03_0020 + 12512841-12512879,12512964-12513009,12513830-125139... 25 6.5
02_03_0012 - 13940583-13940853,13942281-13942509,13945275-139454... 25 6.5
01_06_0441 + 29417004-29417114,29417213-29417311,29417405-294175... 25 6.5
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 25 8.6
04_01_0348 + 4563391-4563689,4563965-4564145,4564186-4564467 25 8.6
>05_06_0234 -
26602660-26602728,26602814-26602988,26603077-26603120,
26603204-26603381,26603468-26603652,26603737-26603801,
26603985-26604066,26604342-26604434,26605096-26605191,
26605312-26605355,26605467-26605530
Length = 364
Score = 28.3 bits (60), Expect = 0.93
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = +1
Query: 151 SKHYNPKFKKERAQKYLNL----DLPDPNEDVTNMTAEKIRQKMKE 276
SK+ P K E + + N +PD +E++ TAE+++ +M++
Sbjct: 234 SKNTKPITKTENCESFFNFFSPPQVPDDDEEIDEDTAEQLQNQMEQ 279
>07_03_0223 -
15368631-15368682,15368765-15368838,15369312-15369364,
15369486-15369584,15370655-15370715,15372741-15372830
Length = 142
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -3
Query: 133 VGGISALGLGEETQTSKVQYLPLLLNI 53
+GG+ G+G +T+ + Q P+L I
Sbjct: 18 MGGVRGQGMGRQTELNTAQVTPMLYGI 44
>06_03_1501 +
30612643-30613310,30613396-30613501,30613732-30613934,
30614211-30614502
Length = 422
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 36 VLHFHYIFNNNGKYCTFEVCVSSPNPSADMPPTISQYHL 152
V+H Y + KY + E V++ PS+ P + +HL
Sbjct: 87 VIHTVYHYAKFAKYYSEEEAVTTAMPSSSSPDVLYLWHL 125
>06_01_0356 +
2557127-2557193,2557272-2557315,2557433-2557528,
2559259-2559351,2559450-2559540,2559617-2559678,
2559754-2559938,2560022-2560199,2560293-2560336,
2560440-2560635,2560728-2560745,2560955-2561005
Length = 374
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = +1
Query: 151 SKHYNPKFKKERAQKYLNL----DLPDPNEDVTNMTAEKIRQKMK 273
SK+ P K E + + N +PD +ED+ TA++++ +M+
Sbjct: 237 SKNAKPITKTEVCESFFNFFSPPQVPDDDEDIDEDTADELQGQME 281
>01_06_1614 - 38648495-38649706
Length = 403
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 154 KHYNPKFKKERAQKYLNLDLPDP 222
KHY+PK KK+ A L L + P
Sbjct: 313 KHYDPKKKKKHAGLVLTLSVAPP 335
>07_03_0020 +
12512841-12512879,12512964-12513009,12513830-12513954,
12514289-12514319,12514427-12514497,12514644-12514692,
12514780-12514880,12515594-12515722,12516076-12516120
Length = 211
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +1
Query: 70 ANTVLSKFVSLRLTPVLICHQQSRNTTSKHYNPKFKKERAQKYLNLD 210
+ V +F SL++ V+ SRN T++ + +KE++ Y+ ++
Sbjct: 93 SQAVARQFKSLKVKAVVALLSLSRNDTAEDVDSNNEKEKSYGYMMME 139
>02_03_0012 -
13940583-13940853,13942281-13942509,13945275-13945476,
13945961-13946278,13947321-13947419
Length = 372
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 145 TTSKHYNPKFKKERAQKYLNLDLPDPNEDVTNMTAEKIR 261
+ K K R+ + + + P PN+DV + AEK+R
Sbjct: 13 SAEKEKGKKAPVSRSSRAGSQEKPAPNKDVYQLFAEKVR 51
>01_06_0441 +
29417004-29417114,29417213-29417311,29417405-29417534,
29417673-29417765,29417892-29417982,29418166-29418222,
29419200-29419320,29420183-29420331,29420675-29420891
Length = 355
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -3
Query: 160 NALRWYCEIVGGISALGLGEETQTSKVQYLPL 65
N L W + G+ +G+G + KV +PL
Sbjct: 98 NGLDWVAITLAGLGTIGVGVGGEEQKVDKIPL 129
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 202 NLDLPDPNEDVTNMTA 249
N DLP P+ DV N+TA
Sbjct: 131 NSDLPPPSFDVANLTA 146
>04_01_0348 + 4563391-4563689,4563965-4564145,4564186-4564467
Length = 253
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +1
Query: 58 SIIMANTVLSKFVSLRLTPVLICHQQSRNTTSKH 159
S ++N +S + + L ++CHQ +T +H
Sbjct: 174 SFFVSNISISNWNRVYLYEPMLCHQDQEDTNDRH 207
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,463,099
Number of Sequences: 37544
Number of extensions: 143526
Number of successful extensions: 351
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 267635896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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