Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_P11
(279 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U43431-2|AAB03695.1| 976|Homo sapiens DNA topoisomerase III pro... 30 1.5
U43431-1|AAB03694.1| 1001|Homo sapiens DNA topoisomerase III pro... 30 1.5
BC051748-1|AAH51748.1| 1001|Homo sapiens topoisomerase (DNA) III... 30 1.5
AL034424-3|CAC36102.1| 551|Homo sapiens chromosome 20 open read... 29 2.0
BC120966-1|AAI20967.1| 97|Homo sapiens small trans-membrane an... 29 2.6
BC120965-1|AAI20966.1| 97|Homo sapiens small trans-membrane an... 29 2.6
BC008712-1|AAH08712.2| 97|Homo sapiens small trans-membrane an... 29 2.6
AK000545-1|BAA91244.1| 442|Homo sapiens protein ( Homo sapiens ... 29 3.5
AB061683-1|BAB85807.1| 2849|Homo sapiens polycystin-1L1 protein. 28 4.6
BC009424-1|AAH09424.1| 469|Homo sapiens BTG3 associated nuclear... 27 8.0
AK131250-1|BAD18429.1| 217|Homo sapiens protein ( Homo sapiens ... 27 8.0
AK094158-1|BAC04296.1| 545|Homo sapiens protein ( Homo sapiens ... 27 8.0
>U43431-2|AAB03695.1| 976|Homo sapiens DNA topoisomerase III
protein.
Length = 976
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 57 FNNNGKYCTFEVCVSSPNPSADMPPTISQYHLKA 158
F NG C F + SPNP A PP ++ L A
Sbjct: 811 FKCNGGSCNFFLWADSPNPGAGGPPALAYRPLGA 844
>U43431-1|AAB03694.1| 1001|Homo sapiens DNA topoisomerase III
protein.
Length = 1001
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 57 FNNNGKYCTFEVCVSSPNPSADMPPTISQYHLKA 158
F NG C F + SPNP A PP ++ L A
Sbjct: 836 FKCNGGSCNFFLWADSPNPGAGGPPALAYRPLGA 869
>BC051748-1|AAH51748.1| 1001|Homo sapiens topoisomerase (DNA) III
alpha protein.
Length = 1001
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 57 FNNNGKYCTFEVCVSSPNPSADMPPTISQYHLKA 158
F NG C F + SPNP A PP ++ L A
Sbjct: 836 FKCNGGSCNFFLWADSPNPGAGGPPALAYRPLGA 869
>AL034424-3|CAC36102.1| 551|Homo sapiens chromosome 20 open reading
frame 123 protein.
Length = 551
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 93 CVSSPNPSADMPPTISQYHLKAL*SKI*EGEGTEI 197
CV +P P+ PP Y L AL ++ EGEG E+
Sbjct: 453 CVPTPRPACK-PPAWIDYRLDALRTESSEGEGKEL 486
>BC120966-1|AAI20967.1| 97|Homo sapiens small trans-membrane and
glycosylated protein protein.
Length = 97
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +3
Query: 27 NVYVLHFHYIFNNNGKYCTFEVCVSSPNPSADMPPTISQ 143
+V +L F Y++ N G Y T+E P+ M +++
Sbjct: 50 SVVILIFFYLYKNKGSYVTYEPTEGEPSAIVQMESDLAK 88
>BC120965-1|AAI20966.1| 97|Homo sapiens small trans-membrane and
glycosylated protein protein.
Length = 97
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +3
Query: 27 NVYVLHFHYIFNNNGKYCTFEVCVSSPNPSADMPPTISQ 143
+V +L F Y++ N G Y T+E P+ M +++
Sbjct: 50 SVVILIFFYLYKNKGSYVTYEPTEGEPSAIVQMESDLAK 88
>BC008712-1|AAH08712.2| 97|Homo sapiens small trans-membrane and
glycosylated protein protein.
Length = 97
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +3
Query: 27 NVYVLHFHYIFNNNGKYCTFEVCVSSPNPSADMPPTISQ 143
+V +L F Y++ N G Y T+E P+ M +++
Sbjct: 50 SVVILIFFYLYKNKGSYVTYEPTEGEPSAIVQMESDLAK 88
>AK000545-1|BAA91244.1| 442|Homo sapiens protein ( Homo sapiens
cDNA FLJ20538 fis, clone KAT11255. ).
Length = 442
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +3
Query: 15 RKNQNVYVLHFHYIFNNNGKYCTFEVCVSSPNPSADMP 128
++ Q++ V F +N+ YC E +S+P P++++P
Sbjct: 268 QRGQSLAVKSFSRRTSNSSSYCPSEPMMSTPPPASELP 305
>AB061683-1|BAB85807.1| 2849|Homo sapiens polycystin-1L1 protein.
Length = 2849
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = -3
Query: 145 YCEIVGGISALGLGEETQTSKVQYLP 68
+C +VG + +LGLG +++S++ LP
Sbjct: 948 FCRVVGLLGSLGLGAISESSQLNLLP 973
>BC009424-1|AAH09424.1| 469|Homo sapiens BTG3 associated nuclear
protein protein.
Length = 469
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 15 RKNQNVYVLHFHYIFNNNGKYCTFEVCVSSPNPSADMP 128
++ Q++ V F N+ YC E +S+P P++++P
Sbjct: 292 QRGQSLAVKSFSRRTPNSSSYCPSEPMMSTPPPASELP 329
>AK131250-1|BAD18429.1| 217|Homo sapiens protein ( Homo sapiens
cDNA FLJ16177 fis, clone BRHIP2008389, weakly similar
to Drosophila melanogaster furry protein short isoform
mRNA. ).
Length = 217
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 272 FIFCLIFSAVILVTSSFGSGRSKLRYFCAL 183
FIFCL+ V+ SSF S +S C L
Sbjct: 176 FIFCLVLVEVLKQVSSFISAKSVFLILCLL 205
>AK094158-1|BAC04296.1| 545|Homo sapiens protein ( Homo sapiens
cDNA FLJ36839 fis, clone ASTRO2011437, highly similar to
Mus musculus SMAR1 mRNA. ).
Length = 545
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 15 RKNQNVYVLHFHYIFNNNGKYCTFEVCVSSPNPSADMP 128
++ Q++ V F N+ YC E +S+P P++++P
Sbjct: 349 QRGQSLAVKSFSRRTPNSSSYCPSEPMMSTPPPASELP 386
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,571,812
Number of Sequences: 237096
Number of extensions: 853975
Number of successful extensions: 1656
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1656
length of database: 76,859,062
effective HSP length: 70
effective length of database: 60,262,342
effective search space used: 1325771524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -