Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_P10
         (287 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|...    45   3e-06
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    26   0.95 
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    26   1.2  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    25   1.7  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    25   1.7  
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     25   2.2  
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    24   3.8  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    24   3.8  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    24   3.8  
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem...    24   5.0  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    24   5.0  
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    23   6.7  
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    23   6.7  
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ...    23   6.7  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    23   6.7  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    23   6.7  
SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo...    23   6.7  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    23   6.7  
SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces p...    23   8.8  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    23   8.8  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    23   8.8  
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    23   8.8  

>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 44.8 bits (101), Expect = 3e-06
 Identities = 25/64 (39%), Positives = 35/64 (54%)
 Frame = +3

Query: 60  SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGGRNAEYDSFLEDLQKGGTG 239
           SGV VS  C   ++E+K  K  RYVVF + D K   V      + ++D+FL DL +    
Sbjct: 4   SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPE---K 60

Query: 240 ECRY 251
           +CRY
Sbjct: 61  DCRY 64


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 26.2 bits (55), Expect = 0.95
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 271 FQIEDDQYLHSPVPPFCRSSRKLSYSALR 185
           +QI +D  L  P+PP+C  + +   +AL+
Sbjct: 305 YQIFEDSNLRYPLPPYCDCTSRSLVTALQ 333


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +3

Query: 66  VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGGR 188
           VT  D  KT  +  +K  KH+ V  YIR  K +D   +GGR
Sbjct: 113 VTNDDGTKTKVDSDEKKHKHKNVRDYIR-FKHVD---IGGR 149


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = -1

Query: 224 LQVFEKAIVFGITSADGFDVDLFLVANVEHHVAVFLILFYFFVCRFASVRYCHTRRHFLM 45
           +QV EK +V G      F   L       H + +FL+   ++ CR  SVR     R  L+
Sbjct: 271 VQVGEKCVVMGQVVPVNFKFTLLGEVKF-HKLRLFLMERRYYYCRQRSVRRKEKTRQLLL 329


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 100 KK*KRIRNTATWCSTFATRNRSTSKPSADVMPNTIAFSKTCRR 228
           K+ + + N+A    TFA      SKP+  V+P++  F+ T  R
Sbjct: 264 KRGQSVDNSAQERKTFAKNPTKNSKPAGQVIPSS-PFTSTLSR 305


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 69  TVSDACKTTYEEIKKDKKHRYV 134
           TV D C   +  IK   KH YV
Sbjct: 316 TVEDFCNNIHSSIKSQFKHAYV 337


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 26  AIFTCLTSKNGVWCDSIGRLQNDIRRNKKG 115
           A+F  + +   V   S+  L+N IR +KKG
Sbjct: 12  ALFALVFASGVVELQSLNELENTIRASKKG 41


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 247 LHSPVPPFCRSSRKLSYSALRPPTVSTSI 161
           L SPV P    S    YS  RPP   +S+
Sbjct: 687 LDSPVTPSSPYSTSQGYSFYRPPKPKSSV 715


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +3

Query: 210 LEDLQKGGTGECRYWSSSI 266
           L  L  GG GE  YW SSI
Sbjct: 162 LNMLPVGGFGEIEYWLSSI 180


>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
           membrane translocase Oxa101|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 72  VSDACKTTYEEIKKDKKHRYV 134
           V D  KT YE+++KD   R V
Sbjct: 322 VRDGFKTQYEQLQKDVSRRAV 342


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 248 SAFSGAALLQVFEKAIVFGITSADGFDVDLF 156
           ++F     LQ    A    + SADG+ VD+F
Sbjct: 235 TSFKNLQFLQTLSLANNLNLYSADGYAVDVF 265


>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +3

Query: 153 EKQIDVETVGGRNAEYDSFLEDLQKGGTGECRYWSSSIWNTRIS 284
           +  I+ +  G  +  Y+S    +++  TGE  Y  S  W++ +S
Sbjct: 235 QADIEFKVKGFISGTYNSIAGKVKRVSTGEVLYKISGKWDSEMS 278


>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
           8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 87  KTTYEEI-KKDKKHRYVVFYIRDEKQIDVET 176
           K  Y++I +K+  +     Y+++EKQID+ T
Sbjct: 4   KINYKDITQKEMFNEIFKEYVKEEKQIDLGT 34


>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -1

Query: 143 VEHHVAVFLILFYFFVCRFASVRYCHTRRH 54
           + H V   +I+ YF  CR   + Y +   H
Sbjct: 412 IGHRVITRIIIAYFLGCRREDIAYLNVPLH 441


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -3

Query: 111  FLFLRMSFCKRPILSHQTPFFDVKHVKIAPLIFLC 7
            F F  +    RPIL  ++  + V    +A  +F+C
Sbjct: 1495 FFFFCLGIMLRPILGDRSKTYGVYLAGVAHFLFVC 1529


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 57  ASGVTVSDACKTTYEEIKK 113
           A+ +  +DACK+ +E IKK
Sbjct: 401 ANHLWTADACKSHFERIKK 419


>SPAC12B10.07 |acp1||F-actin capping protein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +3

Query: 33  LRV*HQKMASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGGRNAE 197
           L++ H+   S V++SD  K       + + +RY    ++    I+ ET+   N E
Sbjct: 40  LKLYHEDYNSSVSISDDEKVIISADNRLEGNRYYDQVLQKSFTINYETMEAENVE 94


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 10/40 (25%), Positives = 18/40 (45%)
 Frame = +3

Query: 96  YEEIKKDKKHRYVVFYIRDEKQIDVETVGGRNAEYDSFLE 215
           Y  + K+   +Y    + D K   + ++      YDSF+E
Sbjct: 5   YNNLLKEVAAKYASIILNDAKIKSLTSINSAEYLYDSFVE 44


>SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 205

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +3

Query: 114 DKKHRYVVFYIRDEKQIDVETVGGRNAEYDSFLEDLQKGG 233
           D+K    + Y++D  +  +E +  R  E +S L     GG
Sbjct: 90  DEKGIPFILYVKDSAKKQLEKIAERKPEENSVLRVTVDGG 129


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 148 ATRNRSTSKPSADVMPNTIAFSKT 219
           A+ NRS S+P A V+ + I F K+
Sbjct: 102 ASGNRSYSRPFAPVVHSRIRFRKS 125


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 170 DVDLFLVANVEHHVAVFLILFYFFVCRFASVRYCHT 63
           + ++ L A V     +F+  F+F++CR   V + HT
Sbjct: 20  NTEILLFALVIILSVIFINFFFFYLCR-CCVYFYHT 54


>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +3

Query: 87  KTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGGRN 191
           K  Y  I  D++++  +    D+  +D+ETV   N
Sbjct: 135 KEYYFAILMDRENQCPMIVASDQGGVDIETVAAEN 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,188,297
Number of Sequences: 5004
Number of extensions: 20702
Number of successful extensions: 89
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)