Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_P10
(287 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein. 55 7e-09
AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated... 55 7e-09
L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein. 31 0.10
AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated... 31 0.10
AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated... 31 0.10
AC098856-8|ABO52819.1| 384|Caenorhabditis elegans Hypothetical ... 30 0.31
AF003388-2|AAB54267.2| 167|Caenorhabditis elegans Hypothetical ... 27 1.6
AL032657-9|CAA21736.1| 829|Caenorhabditis elegans Hypothetical ... 27 2.9
AL110479-13|CAB60318.1| 204|Caenorhabditis elegans Hypothetical... 26 5.0
M22363-2|AAA28159.1| 429|Caenorhabditis elegans protein ( C.ele... 25 6.6
M22363-1|AAA28158.1| 467|Caenorhabditis elegans protein ( C.ele... 25 6.6
L10990-6|AAB59176.1| 467|Caenorhabditis elegans Uncoordinated p... 25 6.6
L10990-5|AAB59175.1| 429|Caenorhabditis elegans Uncoordinated p... 25 6.6
Z93397-1|CAB07719.3| 550|Caenorhabditis elegans Hypothetical pr... 25 8.7
Z75543-7|CAA99868.2| 139|Caenorhabditis elegans Hypothetical pr... 25 8.7
Z66562-6|CAA91463.1| 1266|Caenorhabditis elegans Hypothetical pr... 25 8.7
Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical pr... 25 8.7
Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical pr... 25 8.7
Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical p... 25 8.7
Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical p... 25 8.7
Z22179-1|CAA80169.1| 254|Caenorhabditis elegans Hypothetical pr... 25 8.7
U53341-6|AAC69106.1| 790|Caenorhabditis elegans Hypothetical pr... 25 8.7
U53341-5|AAL06020.1| 842|Caenorhabditis elegans Hypothetical pr... 25 8.7
U21321-8|AAG00045.1| 296|Caenorhabditis elegans Hypothetical pr... 25 8.7
AF498370-1|AAN65376.1| 550|Caenorhabditis elegans GABA-A recept... 25 8.7
>L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein.
Length = 152
Score = 55.2 bits (127), Expect = 7e-09
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Frame = +3
Query: 54 MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGGRNAEYDSFLEDLQK- 227
MASGV V +CK Y+ + +H Y++F I +++ I VE VG +NA Y F+E+++K
Sbjct: 1 MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60
Query: 228 -GGTGECRY 251
ECRY
Sbjct: 61 VEDGKECRY 69
>AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated
protein 60, isoform c protein.
Length = 152
Score = 55.2 bits (127), Expect = 7e-09
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Frame = +3
Query: 54 MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGGRNAEYDSFLEDLQK- 227
MASGV V +CK Y+ + +H Y++F I +++ I VE VG +NA Y F+E+++K
Sbjct: 1 MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60
Query: 228 -GGTGECRY 251
ECRY
Sbjct: 61 VEDGKECRY 69
>L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein.
Length = 165
Score = 31.5 bits (68), Expect = 0.10
Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +3
Query: 54 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVE 173
M+SGV V +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVE 40
>AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated
protein 60, isoform a protein.
Length = 165
Score = 31.5 bits (68), Expect = 0.10
Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +3
Query: 54 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVE 173
M+SGV V +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVE 40
>AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated
protein 60, isoform b protein.
Length = 212
Score = 31.5 bits (68), Expect = 0.10
Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +3
Query: 54 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVE 173
M+SGV V +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVE 40
>AC098856-8|ABO52819.1| 384|Caenorhabditis elegans Hypothetical
protein Y37F4.6 protein.
Length = 384
Score = 29.9 bits (64), Expect = 0.31
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +3
Query: 135 VFYIRDEKQIDVETVGGRNAEYDSFLEDLQK--GGTGECRYWSSSIWNTRI 281
+ Y+ D + + + G R YDSFLE + GTG + + W I
Sbjct: 77 IHYMFDHESVKLFCCGNRFENYDSFLEHYTQTLNGTGHATWMARECWGCGI 127
>AF003388-2|AAB54267.2| 167|Caenorhabditis elegans Hypothetical
protein R10F2.4 protein.
Length = 167
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +1
Query: 103 K*KRIRNTATWCSTFATRNRSTSKPSADVMPNTIAFSKTCRRAAPENADIGRLR 264
K KR + + +T R RS S+P P T A + A P+ A + R
Sbjct: 107 KVKRSESAGSSTTTTKPRTRSGSRPGTSSRPGTNASERATSAAGPKRAASAKKR 160
>AL032657-9|CAA21736.1| 829|Caenorhabditis elegans Hypothetical
protein Y47H9C.9 protein.
Length = 829
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 135 VFYIRDEKQIDVETVGGRNAEYDSFLEDLQKGGTGECRYWSSSIW 269
+ ++ +EK +E + AEYDS ++ GG + R IW
Sbjct: 619 IAHLENEKNKLMEDLRLAQAEYDSLIQTAGGGGQNKTRKRLEEIW 663
>AL110479-13|CAB60318.1| 204|Caenorhabditis elegans Hypothetical
protein Y105C5B.14 protein.
Length = 204
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +3
Query: 198 YDSFLE-DLQKGGTGECRYWSSSIWNTRI 281
YD L+ D++ G G C W WN ++
Sbjct: 98 YDEGLKVDMKSGEAGTCENWIIEDWNEKV 126
>M22363-2|AAA28159.1| 429|Caenorhabditis elegans protein (
C.elegans unc-86 geneencoding two alternative proteins,
complete cds. ).
Length = 429
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -1
Query: 212 EKAIVFGITSADGFDVDLFLVANVEHHVAVFLILFYF 102
EKA F + F V L + + HH A FLI +F
Sbjct: 2 EKAHRFRLPFCSFFPVPLLVSVLIFHHSAPFLIQLFF 38
>M22363-1|AAA28158.1| 467|Caenorhabditis elegans protein (
C.elegans unc-86 geneencoding two alternative proteins,
complete cds. ).
Length = 467
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -1
Query: 212 EKAIVFGITSADGFDVDLFLVANVEHHVAVFLILFYF 102
EKA F + F V L + + HH A FLI +F
Sbjct: 2 EKAHRFRLPFCSFFPVPLLVSVLIFHHSAPFLIQLFF 38
>L10990-6|AAB59176.1| 467|Caenorhabditis elegans Uncoordinated
protein 86, isoform b protein.
Length = 467
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -1
Query: 212 EKAIVFGITSADGFDVDLFLVANVEHHVAVFLILFYF 102
EKA F + F V L + + HH A FLI +F
Sbjct: 2 EKAHRFRLPFCSFFPVPLLVSVLIFHHSAPFLIQLFF 38
>L10990-5|AAB59175.1| 429|Caenorhabditis elegans Uncoordinated
protein 86, isoform a protein.
Length = 429
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -1
Query: 212 EKAIVFGITSADGFDVDLFLVANVEHHVAVFLILFYF 102
EKA F + F V L + + HH A FLI +F
Sbjct: 2 EKAHRFRLPFCSFFPVPLLVSVLIFHHSAPFLIQLFF 38
>Z93397-1|CAB07719.3| 550|Caenorhabditis elegans Hypothetical
protein ZC482.1 protein.
Length = 550
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = -2
Query: 241 SPVPPFCRSSRKLSYSALRP--PTVSTS 164
SP+PP CR+ +S + P P ST+
Sbjct: 430 SPIPPLCRAGNTISEESESPDYPRYSTT 457
>Z75543-7|CAA99868.2| 139|Caenorhabditis elegans Hypothetical
protein K01D12.8 protein.
Length = 139
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +3
Query: 108 KKDKKHRYVVFYIRDEKQIDVETVGGRNAEYDSFLEDLQKGGTG 239
K+D KH Y FYI D + R++ S + GG+G
Sbjct: 26 KRDVKHGYCKFYIDGTSDFD-SSRKKRDSSSSSSSSSSESGGSG 68
>Z66562-6|CAA91463.1| 1266|Caenorhabditis elegans Hypothetical
protein F42E11.1 protein.
Length = 1266
Score = 25.0 bits (52), Expect = 8.7
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +3
Query: 75 SDACKTTYEEIKKD--KKHRYVVFYIRDEKQIDVETVGGRNAEYDSFLEDLQKG 230
S+AC T E + +KH +D K D TVGG + S +E ++ G
Sbjct: 114 SNACLFTMAERRLYCIRKHLLQSVLRQDAKWFDENTVGGLTQKMSSGIEKIKDG 167
>Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6a protein.
Length = 1067
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +3
Query: 87 KTTYEEIKKDKKHRYVVFYIRDE--KQIDVETVGGRNAEYDSFLEDL 221
KT YEE KD Y +I+D + V + + YD +++L
Sbjct: 593 KTCYEEAIKDNSKEYHCSHIKDSPFTLVIVNNIQLKTVYYDDSVQEL 639
>Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6b protein.
Length = 1067
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +3
Query: 87 KTTYEEIKKDKKHRYVVFYIRDE--KQIDVETVGGRNAEYDSFLEDL 221
KT YEE KD Y +I+D + V + + YD +++L
Sbjct: 593 KTCYEEAIKDNSKEYHCSHIKDSPFTLVIVNNIQLKTVYYDDSVQEL 639
>Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6a protein.
Length = 1067
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +3
Query: 87 KTTYEEIKKDKKHRYVVFYIRDE--KQIDVETVGGRNAEYDSFLEDL 221
KT YEE KD Y +I+D + V + + YD +++L
Sbjct: 593 KTCYEEAIKDNSKEYHCSHIKDSPFTLVIVNNIQLKTVYYDDSVQEL 639
>Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6b protein.
Length = 1067
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +3
Query: 87 KTTYEEIKKDKKHRYVVFYIRDE--KQIDVETVGGRNAEYDSFLEDL 221
KT YEE KD Y +I+D + V + + YD +++L
Sbjct: 593 KTCYEEAIKDNSKEYHCSHIKDSPFTLVIVNNIQLKTVYYDDSVQEL 639
>Z22179-1|CAA80169.1| 254|Caenorhabditis elegans Hypothetical
protein F58A4.1 protein.
Length = 254
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +1
Query: 121 NTATWCSTFATRNRSTSKPSADVMPNTIAFSKTCRRAAPENA 246
+T+T ST + + STS+ ++ V P T + + T + P ++
Sbjct: 98 STSTSTSTSTSTSTSTSRSTSTVTPTTRSSTTTTATSTPTSS 139
>U53341-6|AAC69106.1| 790|Caenorhabditis elegans Hypothetical
protein F49E10.2a protein.
Length = 790
Score = 25.0 bits (52), Expect = 8.7
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 70 QYRTLAKRHTKK*KRIRNTATWCSTFATRNRSTSKPS-ADVMPNTIAFSKT 219
QYR + K+ +R +T T +T + +T KPS +P+T S T
Sbjct: 562 QYRPIEKKQGFATLPLRKVSTVPPTTSTSSTTTQKPSTTTTVPSTTPTSTT 612
>U53341-5|AAL06020.1| 842|Caenorhabditis elegans Hypothetical
protein F49E10.2b protein.
Length = 842
Score = 25.0 bits (52), Expect = 8.7
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 70 QYRTLAKRHTKK*KRIRNTATWCSTFATRNRSTSKPS-ADVMPNTIAFSKT 219
QYR + K+ +R +T T +T + +T KPS +P+T S T
Sbjct: 562 QYRPIEKKQGFATLPLRKVSTVPPTTSTSSTTTQKPSTTTTVPSTTPTSTT 612
>U21321-8|AAG00045.1| 296|Caenorhabditis elegans Hypothetical
protein ZK177.2 protein.
Length = 296
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 187 VMPNTIAFSKTCRRAAPENADIGRL 261
++P I FSK+ A PE DI RL
Sbjct: 220 IIPQLIDFSKSWCGADPERHDISRL 244
>AF498370-1|AAN65376.1| 550|Caenorhabditis elegans GABA-A receptor
subunit protein.
Length = 550
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = -2
Query: 241 SPVPPFCRSSRKLSYSALRP--PTVSTS 164
SP+PP CR+ +S + P P ST+
Sbjct: 430 SPIPPLCRAGNTISEESESPDYPRYSTT 457
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,716,033
Number of Sequences: 27780
Number of extensions: 119390
Number of successful extensions: 556
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 269889950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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