Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_P09
         (248 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4SKX9 Cluster: Chromosome 17 SCAF14563, whole genome s...    31   6.5  

>UniRef50_Q4SKX9 Cluster: Chromosome 17 SCAF14563, whole genome
            shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
            Chromosome 17 SCAF14563, whole genome shotgun sequence -
            Tetraodon nigroviridis (Green puffer)
          Length = 1154

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 13/39 (33%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
 Frame = -1

Query: 236  TVPSAWQE--DDIFEKX*PWLTLERIESVTFIFTDNDND 126
            T PS +++  DD+F+   P LT +++++ +F+  D+DN+
Sbjct: 981  TFPSIFEDNSDDLFQTSKPRLTNKKVKAASFLEEDDDNE 1019


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,575,545
Number of Sequences: 1657284
Number of extensions: 3341488
Number of successful extensions: 4649
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 4559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4649
length of database: 575,637,011
effective HSP length: 61
effective length of database: 474,542,687
effective search space used: 9965396427
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)