Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_P08
         (161 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    24   3.1  
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom...    23   5.4  

>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
          |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -1

Query: 56 ASRPKALAQGEQARLTL 6
          A+RPK L++ E+ARL L
Sbjct: 24 AARPKFLSKAERARLAL 40


>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -3

Query: 102 HKLNSAFDAILNVIRCKSPKGISSGRTSTFDPRA 1
           + L S +  +++++  K+PK         FDP A
Sbjct: 25  YMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSA 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 609,891
Number of Sequences: 5004
Number of extensions: 8448
Number of successful extensions: 15
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 34
effective length of database: 2,192,342
effective search space used: 41654498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)