Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_P08
         (161 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0515 - 24483282-24483478,24486451-24486927,24486949-24489580     29   0.67 
09_02_0403 + 8590195-8590443,8590583-8590690,8590788-8590901,859...    26   3.6  
03_05_0153 + 21299150-21299593,21299733-21299873,21299971-213000...    26   3.6  
03_02_0693 - 10441253-10441294,10441404-10441511,10441594-104416...    25   6.3  

>11_06_0515 - 24483282-24483478,24486451-24486927,24486949-24489580
          Length = 1101

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +2

Query: 11  SNVLVLPELMPLGDLHRITFK 73
           SNV++L EL PL +LHR++ +
Sbjct: 706 SNVVMLSELQPLANLHRLSLE 726


>09_02_0403 +
           8590195-8590443,8590583-8590690,8590788-8590901,
           8590998-8591210
          Length = 227

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 93  NSAFDAILNVIRCKSPKGISSGRTSTFDP 7
           NS +  +L  +R +SP  ISS   STF P
Sbjct: 184 NSIYFVVLGFLRLESPATISSELKSTFWP 212


>03_05_0153 +
           21299150-21299593,21299733-21299873,21299971-21300084,
           21300181-21300354,21300486-21300494
          Length = 293

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 93  NSAFDAILNVIRCKSPKGISSGRTSTFDP 7
           NS +  +L  +R +SP  ISS   STF P
Sbjct: 260 NSIYFVVLGFLRLESPATISSELKSTFWP 288


>03_02_0693 - 10441253-10441294,10441404-10441511,10441594-10441677,
            10441765-10443062,10443111-10444804,10444890-10444957,
            10445057-10445186,10445292-10445415,10445551-10445711,
            10446714-10446868
          Length = 1287

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 17/50 (34%), Positives = 20/50 (40%)
 Frame = -3

Query: 159  DFLTGNGDIVILPG*GRSKHKLNSAFDAILNVIRCKSPKGISSGRTSTFD 10
            D L  +   V LP        LN A    LNV+  K P GI     S+ D
Sbjct: 871  DALAPDSRDVPLPNISSFDWMLNGAMQKSLNVLPAKPPNGILQENNSSKD 920


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,156,772
Number of Sequences: 37544
Number of extensions: 60162
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 14,793,348
effective HSP length: 34
effective length of database: 13,516,852
effective search space used: 256820188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)