Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_P08
         (161 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006776-1|AAF60626.2|  616|Caenorhabditis elegans Hypothetical ...    28   1.0  
Z32679-7|CAD90169.1|  177|Caenorhabditis elegans Hypothetical pr...    25   9.6  
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ...    25   9.6  
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ...    25   9.6  

>AC006776-1|AAF60626.2|  616|Caenorhabditis elegans Hypothetical
           protein Y46H3C.4 protein.
          Length = 616

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +2

Query: 5   RGSNVLVLPELMPLGDLHRI--TFKMASKAEFSLCLLRPYPGRMTMSP 142
           RGS   V PE++P  D HRI   F  A+KA++   + +P   R+   P
Sbjct: 488 RGSTKNVCPEVLPSKDGHRIEPRFDAATKAKYEK-MTQPKRERVKKEP 534


>Z32679-7|CAD90169.1|  177|Caenorhabditis elegans Hypothetical
           protein C05B5.8 protein.
          Length = 177

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 69  LKWHQKLNLACVYSALI 119
           LKW Q++  ACV  A+I
Sbjct: 70  LKWSQRVTFACVLIAII 86


>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein 363,
            isoform b protein.
          Length = 2692

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 56   HRITFKMASKAEFSLCLLRPYPGRMTMSP 142
            H++  K+AS   +++C  RP+P  +   P
Sbjct: 1924 HKVWHKLASTHFYAVCRERPHPTTVISPP 1952


>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein 363,
            isoform a protein.
          Length = 2695

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 56   HRITFKMASKAEFSLCLLRPYPGRMTMSP 142
            H++  K+AS   +++C  RP+P  +   P
Sbjct: 1924 HKVWHKLASTHFYAVCRERPHPTTVISPP 1952


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,434,256
Number of Sequences: 27780
Number of extensions: 48080
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 12,740,198
effective HSP length: 34
effective length of database: 11,795,678
effective search space used: 224117882
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)