Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_P06
         (120 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   0.22 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   0.22 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   0.22 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   0.22 
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    19   4.7  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    18   8.1  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    18   8.1  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 0.22
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 102 SR*RPDPPAVCCNHKFGAITRYTVDPPRAE 13
           S+ +PD   V CN   G   ++ V  P AE
Sbjct: 98  SQLKPDKVTVFCNRDLGREKQFIVKLPSAE 127


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 0.22
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 102 SR*RPDPPAVCCNHKFGAITRYTVDPPRAE 13
           S+ +PD   V CN   G   ++ V  P AE
Sbjct: 98  SQLKPDKVTVFCNRDLGREKQFIVKLPSAE 127


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 0.22
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 102 SR*RPDPPAVCCNHKFGAITRYTVDPPRAE 13
           S+ +PD   V CN   G   ++ V  P AE
Sbjct: 98  SQLKPDKVTVFCNRDLGREKQFIVKLPSAE 127


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 0.22
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 102 SR*RPDPPAVCCNHKFGAITRYTVDPPRAE 13
           S+ +PD   V CN   G   ++ V  P AE
Sbjct: 98  SQLKPDKVTVFCNRDLGREKQFIVKLPSAE 127


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
          transcription factor protein.
          Length = 249

 Score = 19.0 bits (37), Expect = 4.7
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 41 GTQSTPLVPNS 9
          GT +TP+ PN+
Sbjct: 4  GTNNTPVQPNA 14


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 18.2 bits (35), Expect = 8.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 91  SRPARCVLQPQV 56
           SRP RC L  Q+
Sbjct: 97  SRPRRCELAAQL 108


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 18.2 bits (35), Expect = 8.1
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = -3

Query: 73  VLQPQVRSDHKV 38
           +L P+V  DH++
Sbjct: 106 LLSPEVGKDHRI 117


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,019
Number of Sequences: 336
Number of extensions: 348
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 20
effective length of database: 115,865
effective search space used:  2201435
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)