Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_P06
         (120 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    24   3.2  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    23   7.4  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    22   9.8  

>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
 Frame = +1

Query: 4   LHEFGTRGVD-CV---PCDRSELVVATHSGRVG 90
           L EF  +G+  C    P D   L V T+S RVG
Sbjct: 203 LWEFSLKGIQSCFSLNPMDSKTLAVGTYSNRVG 235


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 44  VIAPNLWLQHTAGGSGRQR 100
           +I   LW +H + GSGR++
Sbjct: 1   MICQLLWHEHNSMGSGREK 19


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 87  DPPAVCCNHKFGAITRYTVDPPRAE 13
           +P A+C + K G I    VDP   E
Sbjct: 84  EPMAICLSLKGGDIVMVKVDPSPEE 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 526,588
Number of Sequences: 5004
Number of extensions: 5726
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 20
effective length of database: 2,262,398
effective search space used: 42985562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)