Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_P06
         (120 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC117333-1|AAI17334.1|  544|Homo sapiens procollagen-proline, 2-...    32   0.38 
BC089446-1|AAH89446.1|  528|Homo sapiens P4HA3 protein protein.        32   0.38 
AY358521-1|AAQ88885.1|  544|Homo sapiens GPGA711 protein.              32   0.38 
AY327887-1|AAP97874.1|  544|Homo sapiens prolyl 4-hydroxylase al...    32   0.38 
AY313448-1|AAQ87603.1|  544|Homo sapiens collagen prolyl 4-hydro...    32   0.38 
BC126170-1|AAI26171.1|  544|Homo sapiens procollagen-proline, 2-...    30   1.6  

>BC117333-1|AAI17334.1|  544|Homo sapiens procollagen-proline,
           2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase),
           alph protein.
          Length = 544

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 87  DPPAVCCNHKFGAITRYTVDPPRAEFMQ 4
           DP  V  NH+  A+T   V PP AE++Q
Sbjct: 400 DPKLVTLNHRIAALTGLDVRPPYAEYLQ 427


>BC089446-1|AAH89446.1|  528|Homo sapiens P4HA3 protein protein.
          Length = 528

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 87  DPPAVCCNHKFGAITRYTVDPPRAEFMQ 4
           DP  V  NH+  A+T   V PP AE++Q
Sbjct: 384 DPKLVTLNHRIAALTGLDVRPPYAEYLQ 411


>AY358521-1|AAQ88885.1|  544|Homo sapiens GPGA711 protein.
          Length = 544

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 87  DPPAVCCNHKFGAITRYTVDPPRAEFMQ 4
           DP  V  NH+  A+T   V PP AE++Q
Sbjct: 400 DPKLVTLNHRIAALTGLDVRPPYAEYLQ 427


>AY327887-1|AAP97874.1|  544|Homo sapiens prolyl 4-hydroxylase alpha
           III subunit protein.
          Length = 544

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 87  DPPAVCCNHKFGAITRYTVDPPRAEFMQ 4
           DP  V  NH+  A+T   V PP AE++Q
Sbjct: 400 DPKLVTLNHRIAALTGLDVRPPYAEYLQ 427


>AY313448-1|AAQ87603.1|  544|Homo sapiens collagen prolyl
           4-hydroxylase alpha III subunit protein.
          Length = 544

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 87  DPPAVCCNHKFGAITRYTVDPPRAEFMQ 4
           DP  V  NH+  A+T   V PP AE++Q
Sbjct: 400 DPKLVTLNHRIAALTGLDVRPPYAEYLQ 427


>BC126170-1|AAI26171.1|  544|Homo sapiens procollagen-proline,
           2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase),
           alph protein.
          Length = 544

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 87  DPPAVCCNHKFGAITRYTVDPPRAEFMQ 4
           +P  V  NH+  A+T   V PP AE++Q
Sbjct: 400 NPKLVTLNHRIAALTGLDVRPPYAEYLQ 427


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,467,079
Number of Sequences: 237096
Number of extensions: 249890
Number of successful extensions: 800
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 76,859,062
effective HSP length: 20
effective length of database: 72,117,142
effective search space used: 1370225698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)