Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_P06
         (120 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68301-1|CAA92624.1|  360|Caenorhabditis elegans Hypothetical pr...    26   4.3  
X72943-1|CAA51448.1|  360|Caenorhabditis elegans Wnt-2 protein p...    26   4.3  
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z69646-6|CAD44142.1|  287|Caenorhabditis elegans Hypothetical pr...    25   7.5  
Z69646-5|CAA93474.1|  288|Caenorhabditis elegans Hypothetical pr...    25   7.5  

>Z68301-1|CAA92624.1|  360|Caenorhabditis elegans Hypothetical
           protein W01B6.1 protein.
          Length = 360

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 3   AA*IRHEGGRLCTL*SLRTCGCNTQRAGRDV 95
           +A + HE GR C    L +CGC+ +   ++V
Sbjct: 119 SAGVTHEIGRRCKQGLLTSCGCSDETKPKNV 149


>X72943-1|CAA51448.1|  360|Caenorhabditis elegans Wnt-2 protein
           protein.
          Length = 360

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 3   AA*IRHEGGRLCTL*SLRTCGCNTQRAGRDV 95
           +A + HE GR C    L +CGC+ +   ++V
Sbjct: 119 SAGVTHEIGRRCKQGLLTSCGCSDETKPKNV 149


>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
            F55H12.3 protein.
          Length = 2972

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -2

Query: 80   PLCVATTSSERSQGTQSTPLVPNSCS 3
            P+C++TT+   +  + S+P +P+  S
Sbjct: 1165 PVCISTTTPSSTPSSTSSPTLPSGSS 1190


>Z69646-6|CAD44142.1|  287|Caenorhabditis elegans Hypothetical
           protein F57C7.3b protein.
          Length = 287

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
 Frame = -2

Query: 83  RPLCVATTSSERSQGT----QSTPLVPNSCS 3
           RP+ VATTS+ RS  T    Q  P+V ++ S
Sbjct: 182 RPIVVATTSTPRSAATNPPRQQPPMVTSTIS 212


>Z69646-5|CAA93474.1|  288|Caenorhabditis elegans Hypothetical
           protein F57C7.3a protein.
          Length = 288

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
 Frame = -2

Query: 83  RPLCVATTSSERSQGT----QSTPLVPNSCS 3
           RP+ VATTS+ RS  T    Q  P+V ++ S
Sbjct: 183 RPIVVATTSTPRSAATNPPRQQPPMVTSTIS 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,174,704
Number of Sequences: 27780
Number of extensions: 37372
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 12,740,198
effective HSP length: 20
effective length of database: 12,184,598
effective search space used: 231507362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)